Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AXW78_RS06190 Genome accession   NZ_CP014282
Coordinates   1225870..1226193 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain Bt185     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1220870..1231193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXW78_RS06165 (AXW78_06165) - 1221163..1222449 (+) 1287 WP_061883906.1 D-alanyl-D-alanine carboxypeptidase family protein -
  AXW78_RS06170 (AXW78_06170) - 1222640..1223209 (+) 570 WP_046945125.1 signal peptidase I -
  AXW78_RS06175 (AXW78_06175) - 1223270..1223857 (+) 588 WP_000172854.1 CalY family protein -
  AXW78_RS06180 (AXW78_06180) - 1223992..1224816 (+) 825 WP_061883907.1 DUF4047 domain-containing protein -
  AXW78_RS06185 (AXW78_06185) calY 1225202..1225795 (+) 594 WP_000053710.1 biofilm matrix protein CalY -
  AXW78_RS06190 (AXW78_06190) sinR 1225870..1226193 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  AXW78_RS06195 (AXW78_06195) - 1226273..1226407 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  AXW78_RS06200 (AXW78_06200) inhA1 1226750..1229140 (+) 2391 WP_046945123.1 M6 family metalloprotease immune inhibitor InhA1 -
  AXW78_RS06205 (AXW78_06205) - 1229312..1230679 (+) 1368 WP_000028374.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=170183 AXW78_RS06190 WP_000578885.1 1225870..1226193(-) (sinR) [Bacillus thuringiensis strain Bt185]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=170183 AXW78_RS06190 WP_000578885.1 1225870..1226193(-) (sinR) [Bacillus thuringiensis strain Bt185]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment