Detailed information NTG0170133

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AXG53_RS04865
• Genome accession: NZ_CP014274
• Coordinates: 1132598..1134001 (+)
• Length: 467 a.a.
• NCBI ID: WP_062166719.1
• Uniprot ID: A0A126NGM3
• Organism: Stenotrophomonas sp. KCTC 12332 strain YM1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1127598..1139001

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AXG53_RS04850 (AXG53_04850)	sucD	1128590..1129465 (-)	876	WP_062166717.1	succinate--CoA ligase subunit alpha	-
AXG53_RS04855 (AXG53_04855)	sucC	1129487..1130656 (-)	1170	WP_057629765.1	ADP-forming succinate--CoA ligase subunit beta	-
AXG53_RS04860 (AXG53_04860)	-	1130914..1132539 (+)	1626	WP_062166718.1	ATP-binding protein	-
AXG53_RS04865 (AXG53_04865)	pilR	1132598..1134001 (+)	1404	WP_062166719.1	sigma-54 dependent transcriptional regulator	Regulator
AXG53_RS04870 (AXG53_04870)	pilB	1134241..1135971 (-)	1731	WP_062166720.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AXG53_RS04875 (AXG53_04875)	pilA/pilAI	1136806..1137219 (-)	414	WP_062166721.1	pilin	Machinery gene

Sequence

Protein

• Length: 467 a.a.
• Molecular weight: 50522.86 Da
• Isoelectric Point: 6.3571

>NTDB_id=170133 AXG53_RS04865 WP_062166719.1 1132598..1134001(+) (pilR) [Stenotrophomonas sp. KCTC 12332 strain YM1]
MNATHSALIVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNHFDLCLTDMRLPDGNGIELVTEITRDHPATPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDINVLRGLVRHAIELNNAARPSTPPPPENATRLLGSSPAMDELRATIGKVARS
QAPVYILGESGVGKELVARTIHDQGARAAGPFIPVNCGAIPGELMESEFFGHRKGSFTGAHADKPGLFQAASGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGAATEVTVDVRILSATHKDLGTLVQDGRFRHDLYYRINVIELRVPPLRERRSDLPQ
LAGTILQRLAQSQGQKPPHLAGSALEALDAYSFPGNVRELENILERSLALADGDRIDANDLRLPQPQSALQRAAAEGAAT
GAVAVVQEAVVDIDPANAALPSYIEQMERTVIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1404 bp

>NTDB_id=170133 AXG53_RS04865 WP_062166719.1 1132598..1134001(+) (pilR) [Stenotrophomonas sp. KCTC 12332 strain YM1]
ATGAACGCAACACACAGCGCCCTGATCGTCGACGACGAACGCGACATCCGCGAATTACTGGTCCTCACCCTCGGCCGGAT
GGGCCTGCGGATAAGCACCGCCGCCAACCTCGCCGAGGCGCGGGAACTGCTCGCAAGCAACCATTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCTGACGGCAATGGCATCGAGCTGGTGACCGAGATCACCCGCGACCATCCGGCAACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAGGCCCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAATGTGCTGCGCGGCCTGGTCCGCCACGCCATCGAACTGAACAACGCCGCCCGTCCCAGCACCCCACCGCCGC
CGGAAAACGCCACCCGCCTGCTCGGCAGCTCGCCGGCAATGGATGAGTTGCGCGCCACCATCGGCAAGGTCGCGCGCAGC
CAGGCACCGGTCTACATCCTGGGGGAATCGGGCGTCGGCAAGGAACTGGTTGCCCGTACCATCCACGACCAGGGCGCACG
CGCGGCCGGCCCATTCATTCCGGTCAACTGCGGCGCCATTCCGGGCGAACTGATGGAAAGCGAGTTCTTCGGCCATCGCA
AGGGCAGCTTCACCGGTGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCGGCCAGTGGCGGCACCCTGTTTCTGGATGAA
GTGGCTGAGCTGCCACTGCAGATGCAGGTCAAGCTGCTGCGGGCCATCCAGGAAAAATCGGTCCGCCCGGTAGGCGCGGC
CACCGAAGTCACCGTGGATGTACGCATACTCTCGGCCACCCATAAAGACCTGGGCACGCTGGTGCAGGACGGGCGATTCC
GCCATGACCTGTACTACCGCATCAACGTGATCGAACTGCGGGTACCGCCATTGCGCGAACGCCGCAGCGACCTGCCGCAA
CTGGCCGGCACCATCCTGCAGCGGCTGGCGCAATCGCAGGGCCAGAAGCCACCGCACCTAGCCGGTTCAGCATTGGAAGC
GCTGGATGCCTATTCCTTTCCCGGCAACGTCCGCGAACTGGAAAACATCCTCGAGCGCTCGCTGGCACTGGCCGATGGCG
ACCGCATCGACGCCAACGACCTGCGCCTGCCGCAACCGCAGAGCGCGTTGCAACGTGCTGCTGCCGAAGGCGCTGCGACA
GGCGCTGTTGCCGTCGTCCAGGAAGCCGTTGTCGACATCGACCCAGCCAACGCCGCCCTGCCCTCCTATATCGAGCAGAT
GGAGCGCACGGTCATCCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCAAGACCGCAGCCCAACTGGGCATCACCT
TCCGCGCCCTGCGCTACAAGCTGAAAAAGCTAGGCATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (424-464)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (8-115)

3D structure

• AlphaFold DB: A0A126NGM3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.581	99.572	0.623
pilR	Acinetobacter baumannii strain A118	47.722	98.715	0.471