Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   AXE83_RS03810 Genome accession   NZ_CP014264
Coordinates   798909..801161 (-) Length   750 a.a.
NCBI ID   WP_060955510.1    Uniprot ID   A0A109W8K9
Organism   Streptococcus sp. oral taxon 431 strain F0610 (5-114)     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 793909..806161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXE83_RS03785 (AXE83_03785) metK 794500..795717 (+) 1218 WP_060955505.1 methionine adenosyltransferase -
  AXE83_RS03790 (AXE83_03790) - 795714..796970 (-) 1257 WP_060955506.1 ISL3 family transposase -
  AXE83_RS03795 (AXE83_03795) - 797148..797780 (-) 633 WP_060955507.1 GNAT family N-acetyltransferase -
  AXE83_RS03800 (AXE83_03800) - 798007..798306 (-) 300 WP_060955508.1 DUF1827 family protein -
  AXE83_RS03805 (AXE83_03805) - 798365..798820 (-) 456 WP_060955509.1 NUDIX hydrolase -
  AXE83_RS03810 (AXE83_03810) clpE 798909..801161 (-) 2253 WP_060955510.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  AXE83_RS03815 (AXE83_03815) - 801558..801788 (-) 231 WP_000443576.1 DUF1797 family protein -
  AXE83_RS03820 (AXE83_03820) - 801984..802667 (+) 684 WP_060955511.1 amino acid ABC transporter permease -
  AXE83_RS03825 (AXE83_03825) - 802667..803401 (+) 735 WP_060955512.1 amino acid ABC transporter ATP-binding protein -
  AXE83_RS03830 (AXE83_03830) - 803697..804551 (+) 855 WP_060955513.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence


Protein


Download         Length: 750 a.a.        Molecular weight: 83572.81 Da        Isoelectric Point: 5.0166

>NTDB_id=169995 AXE83_RS03810 WP_060955510.1 798909..801161(-) (clpE) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
MLCQNCKINDSTIHLYTNLNGQQKQIDLCQNCYKIIKTDPNNSLFKGITDLNNRDFDPFGDFFNDLNNFRPSSNNNNIPP
TQSGGGYGGNGGYGAQNRGPAQTPPPIQEKGLLDEYGINITEIARRGNIDPVIGRDEEIIRVIEILNRRTKNNPVLIGEP
GVGKTAVVEGLAQKIVDGNVPHKLQGKEVIRLDVVSLVQGTGIRGQFEERMQKLMEEIREREDVILFIDEIHEIVGAGSA
GEGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPTVEETIIILKGIQKKYEDYHHVHYTDGA
IEAAATLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKVIDQRLIEAENLKAQATRDEDFEKAAYFRDQIAKYKEM
QKTKVTDQDTPIISEKTIEHIIEQKTNIPVGDLKEKEQSQLINLADDLKAHVIGQDDAVDKIAKAIRRNRVGLGTPNRPI
GSFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVGYDEAGQLTEKVRRNPYSLILLDE
VEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDAIIIMTSNAGTGKAEASVGFGAAREGRTNSVLGELGNFFSPEFMNRF
DGIIEFKALSKENLLQIVDLMLDDVNKRLSSNNIHLDVTDKVKEKLVDLGYDPKMGARPLRRTIQDYIEDAITDYYLENP
SEKNLKAVMTSNGKIMIKSKNKLETVDSND

Nucleotide


Download         Length: 2253 bp        

>NTDB_id=169995 AXE83_RS03810 WP_060955510.1 798909..801161(-) (clpE) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
ATGCTCTGTCAAAACTGTAAAATCAATGACTCAACGATTCATCTTTATACCAATCTCAATGGGCAACAAAAGCAAATCGA
TCTTTGCCAAAATTGCTACAAAATTATCAAAACAGATCCTAACAATAGCTTGTTCAAGGGCATTACAGATTTAAACAACC
GTGATTTTGATCCCTTTGGAGACTTCTTTAACGATCTCAACAACTTTAGACCTTCTTCTAATAACAACAATATCCCCCCA
ACTCAGTCAGGGGGTGGATACGGTGGAAATGGTGGCTATGGTGCCCAAAATCGTGGTCCTGCTCAAACACCACCACCAAT
CCAGGAAAAAGGACTCTTGGATGAATATGGTATCAATATCACTGAGATTGCCCGTCGTGGAAATATTGACCCTGTAATTG
GCCGTGACGAAGAGATTATCCGTGTCATTGAAATCCTCAACCGCAGAACAAAAAACAACCCTGTCCTCATCGGTGAGCCC
GGTGTTGGTAAGACAGCTGTTGTCGAAGGTTTAGCTCAGAAAATTGTTGACGGTAATGTTCCCCATAAGCTTCAAGGTAA
AGAAGTCATCCGCTTAGATGTCGTTAGCCTTGTTCAAGGAACAGGTATCCGAGGTCAGTTTGAAGAGCGCATGCAAAAAC
TCATGGAAGAAATTCGTGAGCGCGAGGATGTTATTCTCTTCATTGACGAAATTCATGAAATTGTCGGTGCTGGTTCAGCA
GGAGAAGGGAATATGGATGCAGGCAATATCCTAAAACCAGCTCTTGCTCGTGGCGAACTACAACTAGTTGGTGCTACTAC
CCTCAATGAATACCGCATCATCGAAAAAGATGCTGCCCTTGAACGTCGTATGCAACCTGTTAAAGTTGACGAACCAACTG
TTGAAGAAACCATTATTATTCTTAAGGGTATTCAAAAGAAATACGAAGATTATCACCACGTTCATTATACTGATGGGGCT
ATCGAAGCGGCCGCTACTCTTTCTAATCGCTACATCCAAGACCGTTTCTTGCCAGACAAGGCTATTGACCTTCTAGATGA
AGCTGGTTCAAAGATGAACTTAACCTTGAATTTTGTAGATCCTAAGGTCATCGACCAACGCTTAATCGAAGCGGAAAATC
TCAAGGCTCAAGCAACTCGAGACGAAGATTTTGAAAAAGCAGCCTACTTCCGTGACCAGATTGCCAAATATAAGGAAATG
CAAAAGACCAAGGTAACGGATCAGGATACCCCAATCATCAGTGAAAAAACAATCGAACACATCATCGAGCAAAAGACTAA
TATCCCAGTTGGTGATTTGAAAGAAAAAGAACAGTCTCAACTTATCAACCTAGCAGATGACCTCAAGGCTCATGTTATTG
GTCAAGATGATGCAGTTGATAAGATCGCTAAGGCTATCCGTCGTAACCGTGTCGGACTCGGTACTCCAAACCGTCCAATC
GGTAGCTTCCTCTTTGTTGGTCCTACCGGTGTCGGTAAAACAGAACTTTCTAAACAACTGGCCATCGAACTCTTTGGTTC
TGCTGATAGCATGATTCGCTTTGATATGAGTGAATACATGGAAAAACACAGCGTTGCTAAACTCGTTGGTGCCCCTCCGG
GATACGTAGGCTATGATGAAGCTGGACAATTGACTGAAAAAGTTCGTCGTAACCCCTACTCACTGATCCTCCTAGACGAA
GTTGAAAAAGCCCATCCAGATGTTATGCATATGTTCCTCCAAGTCTTGGACGATGGTCGTTTAACGGATGGTCAAGGTCG
CACTGTTAGCTTCAAGGACGCTATCATTATTATGACCTCAAATGCAGGTACAGGTAAGGCAGAAGCTAGTGTTGGTTTTG
GAGCTGCTAGAGAAGGCCGTACCAACTCTGTCCTTGGGGAATTAGGCAACTTCTTTAGTCCAGAATTTATGAACCGTTTT
GATGGCATTATCGAATTCAAGGCTCTCAGCAAGGAAAATCTCCTTCAAATCGTTGACCTCATGTTAGATGATGTCAATAA
ACGACTCTCAAGTAATAACATCCATTTAGATGTGACAGATAAGGTTAAGGAAAAACTTGTAGACCTTGGTTATGATCCAA
AAATGGGAGCTCGCCCACTCCGTCGTACAATCCAAGATTATATCGAAGATGCAATTACGGACTACTACCTTGAAAATCCA
AGCGAGAAAAACCTCAAAGCCGTCATGACTAGCAATGGTAAAATCATGATTAAATCAAAAAATAAATTGGAAACAGTTGA
CTCAAATGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A109W8K9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

93.717

99.733

0.935

  clpE Streptococcus pneumoniae D39

93.717

99.733

0.935

  clpE Streptococcus pneumoniae R6

93.717

99.733

0.935

  clpE Streptococcus pneumoniae TIGR4

93.583

99.733

0.933

  clpE Streptococcus mutans UA159

83.712

99.867

0.836

  clpC Lactococcus lactis subsp. cremoris KW2

76.222

100

0.769

  clpC Bacillus subtilis subsp. subtilis str. 168

51.479

90.133

0.464

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.531

86.4

0.411

  clpC Streptococcus pneumoniae TIGR4

46.994

84.267

0.396

  clpC Streptococcus pneumoniae Rx1

46.994

84.267

0.396

  clpC Streptococcus pneumoniae D39

46.994

84.267

0.396

  clpC Streptococcus thermophilus LMD-9

46.955

83.2

0.391

  clpC Streptococcus thermophilus LMG 18311

46.635

83.2

0.388

  clpC Streptococcus mutans UA159

46.178

83.733

0.387


Multiple sequence alignment