Detailed information    

insolico Bioinformatically predicted

Overview


Name   lqsT   Type   Regulator
Locus tag   AXF37_RS12525 Genome accession   NZ_CP014257
Coordinates   2806615..2807877 (+) Length   420 a.a.
NCBI ID   WP_027222617.1    Uniprot ID   A0AAX2IZK5
Organism   Legionella pneumophila subsp. pascullei strain D-7119     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2801615..2812877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXF37_RS12515 (AXF37_12510) ceg32 2802543..2805371 (+) 2829 WP_027222615.1 Dot/Icm T4SS effector Ceg32/SidI -
  AXF37_RS12520 (AXF37_12515) mesI 2805373..2806263 (+) 891 WP_080273130.1 Dot/Icm T4SS effector metaeffector MesI -
  AXF37_RS12525 (AXF37_12520) lqsT 2806615..2807877 (+) 1263 WP_027222617.1 sensor histidine kinase Regulator
  AXF37_RS12530 (AXF37_12525) - 2807925..2808620 (-) 696 WP_027222618.1 iron-containing redox enzyme family protein -
  AXF37_RS12535 (AXF37_12530) - 2808946..2811369 (-) 2424 WP_027222619.1 SidJ family T4SS effector polyglutamylation protein -
  AXF37_RS12540 (AXF37_12535) - 2811441..2812634 (-) 1194 WP_080273260.1 SidE phosphodiesterase domain-containing protein -

Sequence


Protein


Download         Length: 420 a.a.        Molecular weight: 48705.15 Da        Isoelectric Point: 7.9663

>NTDB_id=169879 AXF37_RS12525 WP_027222617.1 2806615..2807877(+) (lqsT) [Legionella pneumophila subsp. pascullei strain D-7119]
MQRLKNIFTVIYQYLLKETEDASHQITLFGIVMMINYPLFGVFWKLEHFQLTEEFILRITATLLCACLAFNQFWPRQILK
FLPVFWYIVLLFCLPYFFAYLTLINNGSTLWLMNCVSAIFFLLLVSSVLGALVLLVSGVGLAFFHFYILSNNLFIYIPGT
ISLFSLIVTFIAAIIIGALFARDREITYAGRLSGMRMLAGSIAHDLRTPLASIYLQAELQELIVERLNNPEVQKDLKENL
SKITRGIEMSNQLIRMQLNNIQRDKLDTSTFSIYSIKKLLKASLEEYPFRENQKSLIHLNDKNDFSIWIDEVGFKNMMWN
LLKNSLEYIEETNKGEITIWLEQGWEKENFNYLHIKDTAKGLNHKEYEKIFDFFYSGRKEGTGLGLAYCKLLMQAAGGDI
SCKGKKNEFAHFTLKFPKID

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=169879 AXF37_RS12525 WP_027222617.1 2806615..2807877(+) (lqsT) [Legionella pneumophila subsp. pascullei strain D-7119]
ATGCAAAGGTTAAAAAATATATTTACTGTCATTTACCAATATTTATTAAAAGAAACCGAGGATGCAAGTCATCAAATTAC
TTTATTTGGCATCGTCATGATGATTAATTATCCTCTTTTCGGAGTTTTCTGGAAACTGGAACATTTTCAACTGACGGAAG
AGTTTATTTTGCGTATCACTGCAACTCTTCTCTGTGCTTGCCTGGCTTTCAATCAATTTTGGCCAAGACAAATATTAAAA
TTTCTTCCTGTTTTTTGGTATATAGTTCTGCTCTTTTGTTTACCCTACTTTTTTGCTTATTTGACTCTTATAAATAATGG
TTCGACCCTTTGGTTAATGAATTGCGTATCGGCTATTTTTTTTCTTTTATTAGTTTCCAGTGTATTGGGAGCTCTTGTAT
TACTTGTATCAGGTGTTGGGCTTGCTTTTTTTCATTTTTATATTTTATCCAATAATCTGTTTATCTATATCCCAGGAACC
ATATCACTTTTTAGTTTAATTGTTACGTTTATTGCAGCAATAATCATTGGCGCCTTATTTGCCCGAGATAGAGAAATCAC
TTATGCCGGACGTTTATCGGGTATGCGTATGCTGGCTGGAAGTATCGCTCATGATTTAAGAACGCCACTTGCCAGCATTT
ATTTACAGGCTGAATTACAGGAATTGATTGTCGAAAGATTAAATAATCCAGAAGTTCAAAAGGATCTGAAGGAAAATTTA
AGCAAAATTACTCGTGGAATAGAAATGAGTAATCAATTAATTCGCATGCAATTAAATAATATTCAACGAGATAAATTAGA
TACCAGTACATTTTCGATTTATTCCATCAAAAAATTACTCAAAGCCTCTTTAGAGGAATACCCTTTCAGAGAAAATCAAA
AATCATTGATTCATTTAAATGATAAAAATGACTTTTCCATCTGGATAGATGAAGTGGGTTTTAAAAATATGATGTGGAAT
TTGCTAAAAAATAGTCTGGAATATATTGAGGAAACTAATAAAGGCGAAATCACTATTTGGCTAGAACAAGGATGGGAGAA
AGAGAATTTTAATTATCTCCATATAAAGGATACCGCTAAAGGCTTAAATCATAAAGAATATGAAAAAATTTTTGATTTCT
TCTATTCTGGCAGAAAAGAAGGAACCGGTTTAGGCTTGGCCTATTGTAAACTTCTGATGCAAGCAGCAGGTGGTGATATT
TCCTGTAAAGGGAAAAAAAATGAATTCGCTCATTTCACTTTAAAATTTCCCAAAATCGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

97.619

100

0.976


Multiple sequence alignment