Detailed information NTG0169727

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BKD09_RS15280
• Genome accession: NZ_CP017637
• Coordinates: 3182148..3184799 (+)
• Length: 883 a.a.
• NCBI ID: WP_071910837.1
• Uniprot ID: -
• Organism: Bradyrhizobium japonicum strain J5
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3177148..3189799

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BKD09_RS15265 (BKD09_15265)	-	3178025..3180322 (-)	2298	WP_071910833.1	xanthine dehydrogenase family protein molybdopterin-binding subunit	-
BKD09_RS15270 (BKD09_15270)	-	3180322..3181317 (-)	996	WP_071910835.1	FAD binding domain-containing protein	-
BKD09_RS15275 (BKD09_15275)	-	3181314..3181820 (-)	507	WP_155794980.1	(2Fe-2S)-binding protein	-
BKD09_RS15280 (BKD09_15280)	clpC	3182148..3184799 (+)	2652	WP_071910837.1	ATP-dependent chaperone ClpB	Regulator
BKD09_RS48260	-	3184900..3185208 (+)	309	WP_071910839.1	UBP-type zinc finger domain-containing protein	-
BKD09_RS15285 (BKD09_15285)	-	3185376..3186950 (+)	1575	WP_081369427.1	aldehyde dehydrogenase family protein	-
BKD09_RS15290 (BKD09_15290)	-	3187001..3188710 (+)	1710	WP_071910841.1	FAD-dependent oxidoreductase	-
BKD09_RS15295 (BKD09_15295)	-	3188779..3189264 (+)	486	WP_145666765.1	DUF1931 family protein	-

Sequence

Protein

• Length: 883 a.a.
• Molecular weight: 97191.65 Da
• Isoelectric Point: 5.9540

>NTDB_id=169727 BKD09_RS15280 WP_071910837.1 3182148..3184799(+) (clpC) [Bradyrhizobium japonicum strain J5]
MNIEQYTERSRGFIQSAQSLAMREGHQQFSTLHLLKVLLDDSEGLAGGLIDRAGGNSRAILKATEDALNKVPKVSGGGAG
QVYLAPELARAFDAAEKAAEKAGDSFVTVERLLLGLAMDKNSEAGQLLAKGGVNTQNLNAAIESLRKGRTADSATAENAY
DALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLHDKKLL
ALDLGALIAGAKYRGEFEERLKSVLQEVTASGGTFILFIDEMHTLIGAGKTDGAMDASNLLKPALARGELHCIGATTLDE
YQKHVEKDAALARRFQPIFVSEPSVEDTISILRGLKDKYEQHHGVRITDSALVAAATLSHRYITNRFLPDKAIDLMDEAA
ARLKMQVDSKPEELDSLDREIVRLKIEQEALKRESDPGSKIRLQSLEKELADLEEKAAALTARWSAEKSKLVNAQKLKAE
LDGLRVELANAQRRGEFQKAGELAYGRIPQLEKQLAEIEAKENTTQNSGEMVEEAVTANHIAQVVSRWTGVPVDKMLEGE
REKLLKMEESLSERVVGQAEAVHAVATAVRRSRAGLQDPNRPMGSFMFLGPTGVGKTELTKALAEYLFDDETAMVRLDMS
EYMEKHSVSRLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLII
MTSNLGSEFLVNQPEGEDTSAVREQVMGMVRGHFRPEFLNRVDEIILFHRLQRNEMGRIVEIQFARLQKLLTDRKITLTL
DADARDWLAAKGWDPAYGARPLKRVIQKYLQDPLAEMILAGEVKDGDKVAISAEGNVLTFNGKAPQTAEIAQFNAPSPKR
RLH

Nucleotide

• Length: 2652 bp

>NTDB_id=169727 BKD09_RS15280 WP_071910837.1 3182148..3184799(+) (clpC) [Bradyrhizobium japonicum strain J5]
ATGAACATCGAACAATATACCGAGCGCTCGCGCGGCTTTATCCAATCCGCGCAATCGCTCGCGATGCGCGAGGGACACCA
GCAGTTTTCCACGCTGCACCTTTTGAAGGTCCTGCTCGATGACAGCGAGGGCCTTGCCGGCGGTCTGATCGACCGCGCCG
GCGGCAATTCCCGAGCAATCCTGAAGGCGACCGAGGACGCCCTGAACAAGGTGCCAAAGGTCTCCGGCGGCGGCGCCGGG
CAGGTTTATCTTGCCCCCGAACTCGCGCGAGCATTCGACGCCGCTGAAAAGGCGGCCGAAAAGGCCGGCGACAGCTTTGT
CACGGTCGAGCGTCTCCTGCTCGGCCTCGCCATGGACAAGAACAGCGAGGCCGGCCAGCTTCTGGCCAAGGGCGGGGTTA
ACACGCAGAACTTAAATGCTGCGATCGAATCCCTGCGCAAGGGCCGCACCGCGGATTCTGCGACGGCCGAGAACGCTTAT
GACGCGTTGAAGAAATATGCCCGGGACCTGACCCAGGCGGCGCGCGACGGCAAGCTCGATCCGGTCATCGGCCGCGACGA
GGAGATCCGCCGCACGATTCAAGTGCTCTCGCGCCGGACCAAGAACAACCCCGTCCTGATCGGCGAGCCCGGCGTCGGCA
AGACCGCGATCGCGGAAGGGCTCGCGCTGCGCATCGTCAATGGTGACGTGCCGGAGAGCCTACACGACAAGAAGCTGCTT
GCGCTCGACCTCGGCGCGCTGATCGCCGGCGCGAAATACCGCGGTGAGTTCGAGGAGCGGCTGAAGTCCGTGCTCCAGGA
AGTCACCGCGAGCGGGGGTACCTTCATCCTGTTCATCGACGAGATGCACACGCTGATCGGCGCCGGCAAGACTGACGGCG
CAATGGATGCTTCCAACCTGCTCAAGCCCGCGCTTGCCCGCGGCGAGCTGCACTGCATCGGCGCGACCACGCTCGACGAG
TATCAGAAGCACGTCGAGAAGGACGCTGCGCTGGCGCGGCGGTTCCAGCCGATTTTCGTCAGCGAGCCCTCGGTCGAGGA
CACCATCTCGATCCTGCGCGGCCTGAAGGACAAGTACGAGCAGCATCATGGCGTGCGCATCACCGATTCCGCGCTCGTTG
CGGCTGCGACGCTGTCGCACCGCTATATCACCAACCGTTTCCTGCCCGACAAGGCGATCGACCTCATGGACGAGGCCGCG
GCGCGGCTGAAGATGCAGGTCGATTCCAAGCCGGAAGAGTTGGATTCGCTGGATCGGGAAATTGTCCGGCTGAAGATCGA
ACAGGAAGCGCTGAAGAGGGAAAGCGATCCTGGTTCCAAGATTCGGCTGCAGTCGCTCGAGAAAGAGCTCGCCGATCTCG
AGGAGAAGGCCGCGGCGCTCACGGCGCGCTGGAGCGCCGAGAAGAGCAAGCTCGTGAACGCCCAGAAGCTGAAGGCGGAG
CTCGACGGGTTGCGCGTCGAACTCGCCAATGCTCAGCGCCGCGGCGAATTCCAGAAGGCGGGCGAATTGGCCTACGGCCG
GATCCCGCAACTCGAGAAGCAGCTTGCCGAGATCGAGGCCAAGGAAAACACAACGCAGAACTCCGGCGAGATGGTAGAGG
AGGCGGTCACCGCCAACCACATCGCGCAGGTGGTCTCGCGCTGGACCGGCGTGCCCGTCGACAAGATGCTGGAGGGCGAG
AGGGAAAAGCTCCTGAAGATGGAAGAGTCGCTGAGTGAGCGGGTCGTCGGCCAGGCGGAGGCCGTGCATGCGGTCGCGAC
GGCCGTTCGTCGCTCGCGGGCAGGCTTGCAGGACCCCAACCGGCCAATGGGCTCGTTCATGTTTTTGGGCCCCACCGGTG
TCGGCAAGACCGAGTTGACGAAAGCTCTAGCGGAGTACTTGTTCGACGACGAGACCGCGATGGTCCGCCTCGACATGTCC
GAGTACATGGAGAAGCACTCGGTCTCGCGGCTGATCGGCGCCCCTCCGGGTTATGTCGGCTATGACGAGGGTGGCGCGCT
CACCGAAGCGGTGCGGCGCCGGCCCTACCAGGTGGTGCTGTTCGACGAGATCGAGAAGGCGCATCCCGACGTCTTCAATG
TGCTGTTACAGGTGCTCGACGACGGCCGCCTGACCGACGGCCAGGGCCGCACCGTGGATTTCCGCAACACGCTGATCATC
ATGACCTCGAACCTCGGCTCGGAGTTCCTGGTGAACCAGCCGGAGGGCGAGGATACCTCGGCCGTGCGCGAGCAGGTCAT
GGGCATGGTGCGCGGGCATTTCCGCCCCGAATTCCTCAACCGCGTCGACGAGATCATCCTGTTCCACCGCCTGCAACGCA
ACGAGATGGGGCGGATCGTCGAGATCCAGTTCGCGCGGCTGCAGAAGTTGCTGACCGATCGCAAGATTACGCTCACGCTG
GATGCGGATGCGAGGGATTGGCTCGCCGCGAAGGGCTGGGATCCCGCTTACGGCGCGCGACCGCTGAAGCGGGTGATCCA
AAAATATCTGCAGGATCCCCTGGCCGAAATGATCCTCGCCGGCGAGGTGAAGGACGGCGACAAGGTCGCGATCTCCGCCG
AGGGCAATGTGCTGACCTTCAACGGCAAGGCTCCGCAGACGGCGGAAATAGCGCAGTTCAACGCGCCATCTCCGAAACGG
AGATTGCACTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (771-850)

• AAA domain (Cdc48 subfamily) (AAA_2) (601-765)

• AAA lid domain (AAA_lid_9) (344-446)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• ATPase family associated with various cellular activities (AAA) (AAA) (205-336)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.986	98.414	0.472
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.612	98.867	0.421