Detailed information NTG0169720

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BKD09_RS07185
• Genome accession: NZ_CP017637
• Coordinates: 1517318..1519957 (+)
• Length: 879 a.a.
• NCBI ID: WP_071909351.1
• Uniprot ID: -
• Organism: Bradyrhizobium japonicum strain J5
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1512318..1524957

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BKD09_RS07160 (BKD09_07160)	metX	1512469..1513671 (+)	1203	WP_071917104.1	homoserine O-acetyltransferase MetX	-
BKD09_RS07165 (BKD09_07165)	metW	1513687..1514349 (+)	663	WP_071909347.1	methionine biosynthesis protein MetW	-
BKD09_RS07170 (BKD09_07170)	-	1514409..1515272 (-)	864	WP_071909348.1	alpha/beta fold hydrolase	-
BKD09_RS07175 (BKD09_07175)	-	1515488..1516174 (+)	687	WP_071909349.1	TIGR02594 family protein	-
BKD09_RS07180 (BKD09_07180)	-	1516288..1517076 (-)	789	WP_071909350.1	MOSC domain-containing protein	-
BKD09_RS07185 (BKD09_07185)	clpC	1517318..1519957 (+)	2640	WP_071909351.1	ATP-dependent chaperone ClpB	Regulator
BKD09_RS07190 (BKD09_07190)	-	1520037..1520303 (-)	267	WP_071909352.1	hypothetical protein	-
BKD09_RS07195 (BKD09_07195)	-	1520387..1520641 (-)	255	Protein_1428	hypothetical protein	-
BKD09_RS07200 (BKD09_07200)	-	1520752..1522815 (-)	2064	WP_071909353.1	M23 family metallopeptidase	-

Sequence

Protein

• Length: 879 a.a.
• Molecular weight: 96686.07 Da
• Isoelectric Point: 5.7136

>NTDB_id=169720 BKD09_RS07185 WP_071909351.1 1517318..1519957(+) (clpC) [Bradyrhizobium japonicum strain J5]
MNIDKYTERSRGFVQSAQSLAVREGHQQFSTLHVLKVLLDDNEGLAAGLIDRAGGNSRAILKATEDALNKVPKVSGGGAG
QIYLAPELARTFDAAEKAGEKAGDSFVTVERLLLGLALEKTSEAGAILAKGGVTPQNLNAAIEALRKGRTADSATAENAY
DALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPETLQDKKLL
SLDLGALIAGAKYRGEFEERLKAVLQEVTASEGNFILFIDEMHTLIGAGKGDGAMDASNLLKPALARGELHCIGATTLDE
YRKHVEKDAALARRFQPIFVSEPSVEDTISILRGLKDKYEQHHGVRITDSALVAATTLSNRYITDRFLPDKAIDLMDEAA
ARLKMQVDSKPEELDSLDREIIRLKIEQEALKKESDLGSKTRLEGLQKELIELEEKSAALTSRWSAEKNKLSNAQKLKSE
LDALRVDLADAQRRGEFQKAGELAYGRIPQLEKQLADIEAREGSGDMMEEAVTANHIAQVVSRWTGVPVDKMLEGEKEKL
LKMEEQLGQRVVGQAEAVRAVATAVRRSRAGLQDPNRPTGSFMFLGPTGVGKTELTKALAEYLFNDETAMVRLDMSEYME
KHSVSRLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSN
LGSEYLVNQPEGEDTSAVREQVMGMVRGHFRPEFLNRVDEIILFHRLQRSEMGRIVEIQFARLQKLLTDRKIVLTLDAAG
RDWLAAKGWDPAYGARPLKRVIQRYLQDPLAEMILAGDVRDGDTVAISSEGNVLTFNGKAPQTAEITQFDAPVSKRKLN

Nucleotide

• Length: 2640 bp

>NTDB_id=169720 BKD09_RS07185 WP_071909351.1 1517318..1519957(+) (clpC) [Bradyrhizobium japonicum strain J5]
ATGAACATCGACAAATATACCGAACGCTCCAGGGGTTTCGTTCAGTCCGCGCAATCGCTTGCGGTGCGCGAGGGGCATCA
GCAGTTTTCGACCCTGCACGTCCTGAAAGTTCTGCTGGACGACAATGAGGGCCTCGCTGCCGGTCTGATCGACCGCGCCG
GCGGCAATTCCCGCGCCATCCTGAAGGCGACCGAGGACGCCCTCAACAAGGTGCCGAAGGTCTCCGGGGGCGGCGCCGGC
CAGATCTATCTGGCGCCCGAGCTCGCCCGCACTTTCGACGCCGCCGAAAAGGCCGGCGAGAAGGCCGGCGACAGTTTTGT
CACCGTCGAGCGGCTGCTGCTCGGCCTCGCGCTGGAAAAGACCAGCGAGGCCGGCGCGATCCTGGCCAAGGGCGGCGTCA
CCCCGCAAAATCTCAATGCCGCGATCGAGGCGCTGCGCAAGGGCCGCACGGCGGACTCGGCGACCGCCGAGAACGCCTAT
GACGCGCTGAAGAAATATGCCCGCGACCTGACCCAGGCTGCGCGCGACGGCAAGCTCGACCCGGTCATCGGCCGCGACGA
GGAGATCCGCCGCACCATCCAGGTGCTCTCGCGCCGGACCAAGAATAATCCCGTGCTGATCGGTGAGCCCGGCGTCGGCA
AGACCGCCATCGCCGAGGGCCTCGCGCTGCGCATCGTCAACGGCGACGTGCCCGAGACCCTCCAGGACAAGAAGCTGCTC
TCGCTCGATCTCGGCGCGCTGATTGCGGGTGCGAAATACCGCGGCGAGTTCGAGGAGCGGCTGAAGGCCGTGCTCCAGGA
AGTCACCGCGAGCGAGGGCAATTTCATCCTGTTCATCGACGAGATGCATACGCTGATCGGCGCCGGCAAGGGCGACGGCG
CGATGGATGCGTCCAACCTGCTCAAGCCCGCGCTCGCGCGCGGCGAGCTGCACTGCATCGGCGCCACCACGCTCGACGAG
TACCGCAAGCACGTCGAAAAGGATGCGGCGCTTGCGCGGCGCTTCCAGCCGATCTTCGTGAGCGAGCCTTCCGTCGAGGA
CACCATCTCGATCCTCCGCGGGTTGAAAGACAAGTACGAGCAGCACCACGGCGTGCGGATCACCGATTCCGCGCTCGTGG
CGGCGACGACGCTGTCCAACCGCTACATCACCGACCGCTTCCTGCCGGACAAGGCGATCGATCTCATGGACGAGGCCGCT
GCGCGGCTGAAGATGCAGGTCGATTCCAAGCCGGAAGAGCTGGATTCGCTCGACCGCGAGATCATCCGGCTCAAGATCGA
GCAGGAAGCTCTCAAGAAGGAGAGCGATCTCGGCTCCAAGACCCGTCTCGAGGGGCTTCAGAAGGAGCTCATCGAACTCG
AAGAGAAATCCGCGGCCCTGACGTCGCGCTGGAGCGCAGAGAAGAACAAGCTCTCCAACGCCCAGAAGCTGAAGTCAGAG
CTGGATGCGCTGCGCGTCGATCTCGCCGACGCACAGCGGCGCGGCGAATTCCAGAAAGCCGGCGAGCTGGCCTATGGCCG
GATCCCGCAGCTTGAGAAGCAGCTCGCCGATATCGAGGCGCGTGAAGGCTCTGGCGATATGATGGAGGAGGCGGTCACCG
CCAACCACATCGCGCAGGTGGTCTCGCGCTGGACCGGCGTGCCCGTCGACAAGATGCTGGAAGGCGAGAAGGAGAAGCTC
CTGAAGATGGAGGAGCAGCTCGGACAGCGCGTCGTCGGCCAGGCCGAGGCCGTGCGTGCGGTCGCGACCGCCGTGCGCCG
TTCGCGCGCGGGCCTGCAGGACCCGAACCGGCCGACCGGCTCGTTCATGTTCCTGGGGCCCACCGGTGTCGGCAAGACCG
AGCTGACGAAAGCGCTCGCGGAGTACCTGTTCAACGACGAGACCGCGATGGTCCGCCTCGACATGTCCGAGTACATGGAG
AAGCATTCGGTCTCGCGGCTGATCGGTGCGCCTCCCGGCTATGTCGGCTATGACGAGGGCGGCGCGCTCACCGAAGCGGT
GCGGCGCCGGCCCTATCAGGTGGTGCTGTTCGACGAGATCGAGAAGGCGCACCCTGACGTCTTCAACGTCCTGTTGCAGG
TGCTCGACGACGGCCGCCTGACCGATGGCCAGGGCCGCACCGTCGATTTCCGCAACACGCTGATCATCATGACCTCGAAC
CTCGGTTCGGAGTATCTGGTGAATCAACCGGAGGGCGAAGACACCTCAGCCGTGCGTGAACAGGTGATGGGAATGGTGCG
TGGGCATTTCCGGCCCGAGTTCCTGAACCGTGTCGACGAGATCATTCTGTTCCACCGCCTGCAGAGGAGCGAGATGGGCC
GGATCGTCGAGATCCAGTTCGCCCGGCTGCAGAAGCTGTTGACCGATCGCAAGATCGTGCTGACGCTCGATGCCGCGGGC
CGCGACTGGCTTGCTGCGAAGGGCTGGGATCCCGCCTACGGCGCAAGGCCGCTGAAGCGCGTGATCCAGCGCTACCTCCA
GGATCCGCTCGCCGAGATGATCCTGGCCGGCGACGTCAGGGACGGCGATACGGTCGCGATCTCGTCTGAAGGCAACGTCC
TGACCTTCAACGGTAAGGCGCCGCAGACCGCGGAAATCACCCAGTTCGACGCGCCGGTGTCGAAGCGGAAGCTGAACTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (597-761)

• ATPase family associated with various cellular activities (AAA) (AAA) (205-336)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (767-847)

• AAA lid domain (AAA_lid_9) (344-444)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.63	98.407	0.469
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.648	81.456	0.38
clpC	Lactococcus lactis subsp. cremoris KW2	43.708	84.073	0.367
clpE	Streptococcus pneumoniae R6	45.661	79.977	0.365
clpE	Streptococcus pneumoniae Rx1	45.661	79.977	0.365
clpE	Streptococcus pneumoniae TIGR4	45.661	79.977	0.365
clpE	Streptococcus pneumoniae D39	45.661	79.977	0.365