Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AXE85_RS08610 Genome accession   NZ_CP014233
Coordinates   703224..703913 (+) Length   229 a.a.
NCBI ID   WP_231723803.1    Uniprot ID   -
Organism   Gemella sp. oral taxon 928 strain W2231     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 698224..708913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXE85_RS03095 (AXE85_03095) - 698409..698651 (+) 243 WP_062173093.1 hypothetical protein -
  AXE85_RS03105 (AXE85_03105) - 699041..699646 (+) 606 WP_062173095.1 ABC transporter ATP-binding protein -
  AXE85_RS03110 (AXE85_03110) - 699775..701151 (-) 1377 WP_062173096.1 ISL3 family transposase -
  AXE85_RS03115 (AXE85_03115) - 701323..701757 (+) 435 WP_062173097.1 MarR family transcriptional regulator -
  AXE85_RS03120 (AXE85_03120) - 701762..703273 (+) 1512 WP_231723802.1 ABC transporter permease -
  AXE85_RS08610 rcrP 703224..703913 (+) 690 WP_231723803.1 ABC transporter ATP-binding protein Regulator
  AXE85_RS03125 (AXE85_03125) - 703906..705695 (+) 1790 Protein_608 ABC transporter ATP-binding protein -
  AXE85_RS03130 (AXE85_03130) - 705853..706152 (-) 300 WP_062173098.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24841.49 Da        Isoelectric Point: 8.8479

>NTDB_id=169690 AXE85_RS08610 WP_231723803.1 703224..703913(+) (rcrP) [Gemella sp. oral taxon 928 strain W2231]
MKREAGETTAIIGSTGSGKSTLLHLIPRYFDAQQGQITIDGVNIKDVSMSKLRSILGFVPQKGVLFSGTIESNIKFGDAN
ISDTDMKLATEIAQASEFVLEKEGQFSSSIAQGGSNVSGGQKQRLSIARALAKKPKILLFDDSFSALDYKTDVKLRRTLQ
EKMSGITTIIVAQRIATIMNADKIIVMNEGKIVGIGRHEELLHNCPTYLEIAESQLSEEELGKGGKRHG

Nucleotide


Download         Length: 690 bp        

>NTDB_id=169690 AXE85_RS08610 WP_231723803.1 703224..703913(+) (rcrP) [Gemella sp. oral taxon 928 strain W2231]
TTGAAGCGGGAAGCCGGGGAAACAACAGCTATTATAGGAAGCACCGGTAGTGGGAAATCGACACTACTTCATTTAATACC
TCGTTATTTTGACGCTCAGCAAGGTCAAATTACGATTGATGGAGTGAATATTAAAGATGTCAGTATGAGTAAACTACGTA
GCATTTTAGGTTTTGTACCACAAAAAGGTGTTTTATTCAGTGGAACTATTGAATCTAATATTAAGTTTGGTGATGCAAAT
ATCAGCGATACTGATATGAAATTAGCAACGGAAATAGCCCAAGCTAGTGAGTTCGTTCTTGAAAAAGAAGGACAATTTTC
TAGTTCTATTGCTCAAGGTGGAAGTAACGTATCCGGTGGGCAAAAGCAACGTTTATCCATAGCCCGTGCTTTGGCGAAAA
AACCTAAAATATTATTGTTCGATGATAGTTTTTCAGCATTAGATTATAAAACAGATGTTAAACTACGTCGTACGCTACAA
GAAAAAATGTCGGGCATTACTACAATTATTGTTGCACAGCGTATAGCAACCATTATGAATGCCGATAAAATTATTGTAAT
GAATGAAGGGAAAATAGTAGGAATAGGACGCCATGAAGAATTACTTCATAATTGTCCAACATATTTAGAAATTGCAGAAA
GTCAACTTAGTGAAGAAGAATTGGGAAAAGGAGGTAAGCGCCATGGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(4-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

59.375

97.817

0.581

Multiple sequence alignment