Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BJJ90_RS25805 Genome accession   NZ_CP017631
Coordinates   4737113..4737589 (+) Length   158 a.a.
NCBI ID   WP_001384108.1    Uniprot ID   A7ZRC3
Organism   Escherichia coli strain SLK172     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4732113..4742589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJJ90_RS25785 (BJJ90_23935) - 4732465..4735311 (+) 2847 WP_053884630.1 Ag43/Cah family autotransporter adhesin -
  BJJ90_RS25790 (BJJ90_23940) - 4735382..4735615 (+) 234 WP_001117568.1 DUF905 family protein -
  BJJ90_RS25795 (BJJ90_23945) - 4735705..4736523 (+) 819 WP_042634191.1 DUF932 domain-containing protein -
  BJJ90_RS25800 (BJJ90_23950) - 4736615..4737097 (+) 483 WP_000206657.1 antirestriction protein -
  BJJ90_RS25805 (BJJ90_23955) radC 4737113..4737589 (+) 477 WP_001384108.1 RadC family protein Machinery gene
  BJJ90_RS25810 (BJJ90_23960) - 4737682..4737903 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  BJJ90_RS25815 (BJJ90_23965) - 4737983..4738351 (+) 369 WP_001285613.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BJJ90_RS25820 (BJJ90_23970) cbtA 4738441..4738818 (+) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BJJ90_RS33045 - 4738815..4739012 (+) 198 Protein_4641 DUF5983 family protein -
  BJJ90_RS33050 (BJJ90_23975) - 4739040..4739237 (+) 198 WP_085949090.1 DUF957 domain-containing protein -
  BJJ90_RS25830 (BJJ90_23980) - 4739322..4740164 (+) 843 WP_001280493.1 DUF4942 domain-containing protein -
  BJJ90_RS34650 - 4740538..4740652 (+) 115 Protein_4644 integrase -
  BJJ90_RS25840 (BJJ90_23985) cadC 4740912..4742450 (+) 1539 WP_001187177.1 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17682.33 Da        Isoelectric Point: 6.9859

>NTDB_id=169601 BJJ90_RS25805 WP_001384108.1 4737113..4737589(+) (radC) [Escherichia coli strain SLK172]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVIPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=169601 BJJ90_RS25805 WP_001384108.1 4737113..4737589(+) (radC) [Escherichia coli strain SLK172]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATACTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCATCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392