Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BJJ90_RS24495 Genome accession   NZ_CP017631
Coordinates   4509974..4510450 (-) Length   158 a.a.
NCBI ID   WP_069723416.1    Uniprot ID   -
Organism   Escherichia coli strain SLK172     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4504974..4515450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJJ90_RS24445 (BJJ90_22715) nanS 4505115..4506095 (+) 981 WP_001295601.1 sialate O-acetylesterase -
  BJJ90_RS24450 (BJJ90_22720) - 4506103..4506753 (-) 651 WP_001037966.1 HNH endonuclease -
  BJJ90_RS34240 - 4506890..4507033 (+) 144 Protein_4391 restriction endonuclease -
  BJJ90_RS34645 - 4507697..4507831 (-) 135 Protein_4392 transcriptional regulator -
  BJJ90_RS33510 - 4507801..4507950 (-) 150 Protein_4393 hypothetical protein -
  BJJ90_RS24465 (BJJ90_22730) - 4508035..4508232 (-) 198 WP_000839249.1 DUF957 domain-containing protein -
  BJJ90_RS24470 (BJJ90_22735) - 4508244..4508732 (-) 489 WP_001470575.1 DUF5983 family protein -
  BJJ90_RS24475 (BJJ90_22740) - 4508729..4509106 (-) 378 WP_001506713.1 TA system toxin CbtA family protein -
  BJJ90_RS24480 (BJJ90_22745) - 4509153..4509527 (-) 375 WP_052913677.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BJJ90_RS24490 (BJJ90_22755) - 4509690..4509911 (-) 222 WP_000692311.1 DUF987 domain-containing protein -
  BJJ90_RS24495 (BJJ90_22760) radC 4509974..4510450 (-) 477 WP_069723416.1 RadC family protein Machinery gene
  BJJ90_RS24500 (BJJ90_22765) - 4510466..4510939 (-) 474 WP_001368734.1 antirestriction protein -
  BJJ90_RS24505 (BJJ90_22770) - 4511033..4511278 (-) 246 WP_001164975.1 hypothetical protein -
  BJJ90_RS24510 (BJJ90_22775) - 4511278..4511829 (-) 552 Protein_4402 DUF932 domain-containing protein -
  BJJ90_RS24515 (BJJ90_22780) - 4511839..4512276 (-) 438 Protein_4403 DDE-type integrase/transposase/recombinase -
  BJJ90_RS24530 (BJJ90_22790) - 4512330..4513543 (+) 1214 WP_173662723.1 IS3 family transposase -
  BJJ90_RS24540 (BJJ90_22795) - 4513586..4514083 (-) 498 Protein_4405 integrase arm-type DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17703.35 Da        Isoelectric Point: 7.2020

>NTDB_id=169600 BJJ90_RS24495 WP_069723416.1 4509974..4510450(-) (radC) [Escherichia coli strain SLK172]
MQQLSFLPGEMTPSERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=169600 BJJ90_RS24495 WP_069723416.1 4509974..4510450(-) (radC) [Escherichia coli strain SLK172]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCAGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGTTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392