Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   VN23_RS18715 Genome accession   NZ_CP014222
Coordinates   4147139..4148512 (+) Length   457 a.a.
NCBI ID   WP_046351713.1    Uniprot ID   A0A0X8GPG7
Organism   Janthinobacterium sp. B9-8     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4142139..4153512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VN23_RS18690 (VN23_18690) - 4143764..4144735 (+) 972 WP_046351708.1 KpsF/GutQ family sugar-phosphate isomerase -
  VN23_RS18695 (VN23_18695) - 4144842..4145357 (+) 516 WP_046351709.1 HAD family hydrolase -
  VN23_RS18700 (VN23_18700) lptC 4145357..4145935 (+) 579 WP_046351710.1 LPS export ABC transporter periplasmic protein LptC -
  VN23_RS18705 (VN23_18705) lptA 4145913..4146416 (+) 504 WP_046351711.1 lipopolysaccharide transport periplasmic protein LptA -
  VN23_RS18710 (VN23_18710) lptB 4146413..4147138 (+) 726 WP_046351712.1 LPS export ABC transporter ATP-binding protein -
  VN23_RS18715 (VN23_18715) rpoN/rpoN1 4147139..4148512 (+) 1374 WP_046351713.1 RNA polymerase factor sigma-54 Machinery gene
  VN23_RS18720 (VN23_18720) raiA 4148537..4148863 (+) 327 WP_046351714.1 ribosome-associated translation inhibitor RaiA -
  VN23_RS18725 (VN23_18725) ptsN 4148969..4149442 (+) 474 WP_046351715.1 PTS IIA-like nitrogen regulatory protein PtsN -
  VN23_RS18730 (VN23_18730) hprK 4149423..4150367 (+) 945 WP_046351716.1 HPr(Ser) kinase/phosphatase -
  VN23_RS18735 (VN23_18735) rapZ 4150451..4151299 (+) 849 WP_046351717.1 RNase adapter RapZ -
  VN23_RS18740 (VN23_18740) - 4151337..4151696 (+) 360 WP_052746560.1 NusG domain II-containing protein -
  VN23_RS18745 (VN23_18745) - 4151671..4152195 (+) 525 WP_046351719.1 Gx transporter family protein -
  VN23_RS18750 (VN23_18750) - 4152445..4153053 (+) 609 WP_046351720.1 flavin prenyltransferase UbiX -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 51748.87 Da        Isoelectric Point: 4.8091

>NTDB_id=169562 VN23_RS18715 WP_046351713.1 4147139..4148512(+) (rpoN/rpoN1) [Janthinobacterium sp. B9-8]
MKQTLQLRLSQQLNLTPQLQQAIKLLQLSTLEFQQELEQYLSENPLLERGEEAAAGEAEQAEPQWEMGEDDGLRWEGTSH
GSSDDDDDFDPASNIARDLDLREYLLQQAGLLPLSHRDKSLLLMLIEALDEDGFLSQSLEDVFSQLPEELIQDYELELDD
LRIALIRLQHLEPLGIGARDTADCLCLQLRQKPVSAARDLALQIAENSLDLLAGRDYTRLKRAFKCEDAELKAAQELIVS
LNPRPSAQWSVASPRYVSPDVVVQKVRGVWRVRLHDASMPKLRVNRLYADILQKGDGGHLARELQEARWLVKSVQQRFDT
ILRVATAIVERQRAFFEHGEVAMRPLVLRDIAEELDLHESTISRVTTQKYMLTPRGLYEFKFFFGSHVDTDAGGECSATA
IKALIKQMVQQEDKKKPLSDSVLAEALSAQGIVVARRTVAKYREALQIYPVSQRKSL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=169562 VN23_RS18715 WP_046351713.1 4147139..4148512(+) (rpoN/rpoN1) [Janthinobacterium sp. B9-8]
ATGAAACAAACCCTGCAGCTGCGGTTATCCCAGCAACTTAATCTTACTCCTCAGTTGCAGCAGGCTATCAAGCTGCTGCA
GCTTTCCACTCTTGAGTTTCAACAAGAGCTTGAACAGTATCTGAGCGAAAACCCGTTATTGGAGCGTGGCGAAGAAGCCG
CTGCTGGCGAGGCAGAGCAAGCAGAGCCGCAGTGGGAAATGGGTGAAGACGATGGTTTACGCTGGGAAGGCACAAGCCAC
GGGAGCTCGGATGATGACGATGATTTTGATCCGGCCAGCAATATCGCCCGCGATTTAGATTTACGCGAATACTTGCTGCA
GCAAGCAGGTTTGCTGCCTTTGTCGCATCGGGATAAGTCCTTGTTATTGATGCTGATTGAGGCATTGGATGAAGATGGGT
TTCTTTCTCAATCCTTAGAAGATGTCTTTTCTCAGCTGCCAGAGGAACTTATCCAAGATTATGAACTCGAACTTGATGAC
TTAAGAATTGCTTTAATTCGCTTACAGCATTTAGAGCCTTTGGGAATTGGAGCAAGAGATACCGCTGATTGTTTATGCTT
ACAATTGCGCCAGAAGCCAGTGAGCGCCGCCCGTGATTTAGCCTTGCAGATTGCCGAAAATTCACTCGATTTATTAGCTG
GCCGGGACTACACTAGGCTTAAACGGGCTTTTAAATGCGAGGATGCTGAGTTAAAAGCAGCGCAAGAATTGATTGTAAGT
TTAAACCCTAGGCCAAGCGCACAATGGTCTGTAGCATCGCCTAGATATGTAAGCCCTGATGTCGTTGTACAAAAAGTACG
CGGTGTTTGGCGGGTTAGATTACACGATGCTTCGATGCCTAAATTGCGCGTGAATCGCCTTTATGCAGATATCTTACAAA
AAGGCGATGGCGGCCATTTAGCGCGAGAGTTACAAGAAGCACGTTGGTTAGTAAAAAGTGTGCAGCAGCGATTTGATACC
ATTTTGCGAGTAGCCACAGCGATTGTAGAACGGCAGCGCGCATTTTTTGAACACGGTGAAGTGGCGATGCGCCCGCTAGT
GCTCAGAGATATCGCCGAAGAGCTAGATTTACATGAGTCGACTATTTCTAGGGTAACCACGCAAAAATATATGCTTACGC
CGCGTGGCCTATATGAATTTAAGTTTTTCTTCGGTAGCCATGTTGATACGGATGCCGGAGGAGAGTGTTCTGCTACAGCG
ATCAAAGCATTGATCAAGCAGATGGTGCAGCAAGAAGATAAGAAAAAACCTTTAAGTGATAGCGTATTGGCAGAAGCATT
ATCCGCTCAAGGTATTGTGGTAGCCCGGCGCACCGTTGCCAAATACCGTGAAGCGTTGCAGATTTACCCAGTAAGTCAGC
GCAAAAGTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(300-455)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(94-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8GPG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.475

100

0.58

Multiple sequence alignment