Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BJJ90_RS06330 Genome accession   NZ_CP017631
Coordinates   1196630..1197106 (-) Length   158 a.a.
NCBI ID   WP_001366855.1    Uniprot ID   -
Organism   Escherichia coli strain SLK172     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1191630..1202106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJJ90_RS06300 (BJJ90_05905) - 1193789..1194634 (-) 846 WP_001280435.1 DUF4942 domain-containing protein -
  BJJ90_RS06305 (BJJ90_05910) - 1194731..1194928 (-) 198 WP_000839263.1 DUF957 domain-containing protein -
  BJJ90_RS06310 (BJJ90_05915) - 1194940..1195428 (-) 489 WP_001177592.1 DUF5983 family protein -
  BJJ90_RS06315 (BJJ90_05920) cbtA 1195419..1195802 (-) 384 WP_000854822.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BJJ90_RS06320 (BJJ90_05925) - 1195892..1196260 (-) 369 WP_001285610.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BJJ90_RS06325 (BJJ90_05930) - 1196340..1196561 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  BJJ90_RS06330 (BJJ90_05935) radC 1196630..1197106 (-) 477 WP_001366855.1 RadC family protein Machinery gene
  BJJ90_RS06335 (BJJ90_05940) - 1197122..1197607 (-) 486 WP_072794436.1 antirestriction protein -
  BJJ90_RS06340 (BJJ90_05945) - 1197698..1198516 (-) 819 WP_001234702.1 DUF932 domain-containing protein -
  BJJ90_RS06345 (BJJ90_05950) - 1198843..1201689 (-) 2847 WP_072775638.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17625.24 Da        Isoelectric Point: 7.2517

>NTDB_id=169561 BJJ90_RS06330 WP_001366855.1 1196630..1197106(-) (radC) [Escherichia coli strain SLK172]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=169561 BJJ90_RS06330 WP_001366855.1 1196630..1197106(-) (radC) [Escherichia coli strain SLK172]
ATGCAACAACTTTCCTTTCTGCCCGGCGCGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392