Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | VN23_RS16140 | Genome accession | NZ_CP014222 |
| Coordinates | 3572542..3573771 (+) | Length | 409 a.a. |
| NCBI ID | WP_062654923.1 | Uniprot ID | A0A0X8GRD5 |
| Organism | Janthinobacterium sp. B9-8 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3567542..3578771
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VN23_RS16125 (VN23_16125) | - | 3568683..3569678 (+) | 996 | WP_052746659.1 | HDOD domain-containing protein | - |
| VN23_RS16130 (VN23_16130) | - | 3569675..3571705 (+) | 2031 | WP_052746658.1 | EAL domain-containing protein | - |
| VN23_RS16135 (VN23_16135) | rsmD | 3571856..3572410 (-) | 555 | WP_046352542.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| VN23_RS16140 (VN23_16140) | pilA | 3572542..3573771 (+) | 1230 | WP_062654923.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| VN23_RS16145 (VN23_16145) | - | 3573991..3574494 (+) | 504 | WP_046352540.1 | GNAT family N-acetyltransferase | - |
| VN23_RS16150 (VN23_16150) | ftsE | 3574732..3575385 (+) | 654 | WP_046352539.1 | cell division ATP-binding protein FtsE | - |
| VN23_RS16155 (VN23_16155) | ftsX | 3575392..3576294 (+) | 903 | WP_046352538.1 | permease-like cell division protein FtsX | - |
| VN23_RS16160 (VN23_16160) | rpoH | 3576507..3577358 (+) | 852 | WP_046352537.1 | RNA polymerase sigma factor RpoH | - |
| VN23_RS16165 (VN23_16165) | msrP | 3577566..3578489 (-) | 924 | WP_046352536.1 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 42615.08 Da Isoelectric Point: 5.2826
>NTDB_id=169554 VN23_RS16140 WP_062654923.1 3572542..3573771(+) (pilA) [Janthinobacterium sp. B9-8]
MFSFFRKKKPVAPVTPETPLVVEPVQIDTAPIHHAATPIVDVAEIAIEAASAEPLIVEEAALAEAIAPAPAPAPAPAPAP
APAPAPAPAPAPAPAPAAIIEVAQPQAKQSWAERLKAGLSKTRDRLGKSLAGLFGGGQIDEDLYEELESVLLTADMGVDA
TQHLLSDVRNRVSLAGLKNGSELKGALQSSLTDLISPLQKPLDVSTHKPFILMVAGVNGAGKTTSIGKLAKYFQGQGLSV
LLAAGDTFRAAAREQLVVWGERNGVQVIAQDGGDSAAVAFDAVNAAKARGIDVVIVDTAGRLPTQLHLMEEIKKVKRVVQ
KADPTGPHEIMLVLDANNGQNALSQVKSFDDALGLTGLILTKLDGTAKGGIIAAIAKQRPIPLRFVGVGESIDDLRPFIA
KDYVDALFD
MFSFFRKKKPVAPVTPETPLVVEPVQIDTAPIHHAATPIVDVAEIAIEAASAEPLIVEEAALAEAIAPAPAPAPAPAPAP
APAPAPAPAPAPAPAPAAIIEVAQPQAKQSWAERLKAGLSKTRDRLGKSLAGLFGGGQIDEDLYEELESVLLTADMGVDA
TQHLLSDVRNRVSLAGLKNGSELKGALQSSLTDLISPLQKPLDVSTHKPFILMVAGVNGAGKTTSIGKLAKYFQGQGLSV
LLAAGDTFRAAAREQLVVWGERNGVQVIAQDGGDSAAVAFDAVNAAKARGIDVVIVDTAGRLPTQLHLMEEIKKVKRVVQ
KADPTGPHEIMLVLDANNGQNALSQVKSFDDALGLTGLILTKLDGTAKGGIIAAIAKQRPIPLRFVGVGESIDDLRPFIA
KDYVDALFD
Nucleotide
Download Length: 1230 bp
>NTDB_id=169554 VN23_RS16140 WP_062654923.1 3572542..3573771(+) (pilA) [Janthinobacterium sp. B9-8]
ATGTTCAGTTTTTTTCGCAAAAAAAAGCCGGTTGCACCGGTCACCCCAGAAACACCGCTGGTGGTAGAGCCTGTCCAAAT
CGACACGGCACCCATTCATCACGCAGCTACGCCTATTGTTGACGTAGCTGAAATTGCCATTGAAGCGGCAAGCGCTGAGC
CGCTGATTGTTGAAGAAGCAGCGCTGGCCGAGGCCATTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCT
GCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTGCCATTATTGAAGTCGCGCAGCCACAAGC
CAAGCAATCTTGGGCAGAGCGGCTAAAAGCGGGTCTCTCTAAAACACGAGATCGCTTGGGCAAAAGCTTGGCGGGGCTGT
TTGGCGGCGGGCAGATTGATGAAGATCTGTACGAAGAGCTAGAATCCGTGCTGCTGACCGCCGATATGGGCGTCGATGCA
ACACAGCATTTGCTCAGCGATGTGCGAAATCGCGTAAGCCTTGCCGGGCTTAAAAATGGCTCAGAGCTGAAAGGTGCATT
ACAAAGCTCCCTCACCGATTTAATCAGCCCCTTGCAAAAACCGCTGGATGTTAGCACGCATAAGCCCTTTATCTTGATGG
TAGCGGGTGTAAATGGTGCGGGTAAAACCACTAGCATCGGCAAGCTGGCTAAATATTTCCAAGGCCAGGGGCTGAGCGTA
CTCCTCGCCGCTGGGGACACTTTCCGTGCTGCCGCGCGTGAACAATTGGTGGTATGGGGTGAGCGCAATGGCGTGCAAGT
GATTGCCCAGGATGGCGGCGATTCTGCGGCTGTTGCCTTTGATGCGGTCAACGCCGCCAAAGCGCGTGGCATTGATGTCG
TGATTGTCGACACTGCCGGCCGCCTGCCTACGCAACTGCATTTGATGGAAGAAATCAAAAAAGTAAAACGCGTAGTACAA
AAAGCCGATCCAACAGGCCCGCACGAAATCATGCTGGTGCTGGATGCCAATAACGGCCAGAACGCGCTCAGCCAGGTGAA
ATCATTCGACGATGCACTGGGCCTAACCGGTTTAATTTTGACCAAGCTCGATGGCACAGCCAAGGGCGGAATTATCGCGG
CAATTGCCAAACAGCGCCCGATTCCACTGCGCTTTGTGGGCGTGGGCGAAAGCATCGACGATTTACGCCCCTTTATTGCC
AAAGATTATGTGGATGCGTTGTTTGATTAA
ATGTTCAGTTTTTTTCGCAAAAAAAAGCCGGTTGCACCGGTCACCCCAGAAACACCGCTGGTGGTAGAGCCTGTCCAAAT
CGACACGGCACCCATTCATCACGCAGCTACGCCTATTGTTGACGTAGCTGAAATTGCCATTGAAGCGGCAAGCGCTGAGC
CGCTGATTGTTGAAGAAGCAGCGCTGGCCGAGGCCATTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCT
GCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTGCCATTATTGAAGTCGCGCAGCCACAAGC
CAAGCAATCTTGGGCAGAGCGGCTAAAAGCGGGTCTCTCTAAAACACGAGATCGCTTGGGCAAAAGCTTGGCGGGGCTGT
TTGGCGGCGGGCAGATTGATGAAGATCTGTACGAAGAGCTAGAATCCGTGCTGCTGACCGCCGATATGGGCGTCGATGCA
ACACAGCATTTGCTCAGCGATGTGCGAAATCGCGTAAGCCTTGCCGGGCTTAAAAATGGCTCAGAGCTGAAAGGTGCATT
ACAAAGCTCCCTCACCGATTTAATCAGCCCCTTGCAAAAACCGCTGGATGTTAGCACGCATAAGCCCTTTATCTTGATGG
TAGCGGGTGTAAATGGTGCGGGTAAAACCACTAGCATCGGCAAGCTGGCTAAATATTTCCAAGGCCAGGGGCTGAGCGTA
CTCCTCGCCGCTGGGGACACTTTCCGTGCTGCCGCGCGTGAACAATTGGTGGTATGGGGTGAGCGCAATGGCGTGCAAGT
GATTGCCCAGGATGGCGGCGATTCTGCGGCTGTTGCCTTTGATGCGGTCAACGCCGCCAAAGCGCGTGGCATTGATGTCG
TGATTGTCGACACTGCCGGCCGCCTGCCTACGCAACTGCATTTGATGGAAGAAATCAAAAAAGTAAAACGCGTAGTACAA
AAAGCCGATCCAACAGGCCCGCACGAAATCATGCTGGTGCTGGATGCCAATAACGGCCAGAACGCGCTCAGCCAGGTGAA
ATCATTCGACGATGCACTGGGCCTAACCGGTTTAATTTTGACCAAGCTCGATGGCACAGCCAAGGGCGGAATTATCGCGG
CAATTGCCAAACAGCGCCCGATTCCACTGCGCTTTGTGGGCGTGGGCGAAAGCATCGACGATTTACGCCCCTTTATTGCC
AAAGATTATGTGGATGCGTTGTTTGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
59.716 |
100 |
0.616 |