Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VN23_RS09775 Genome accession   NZ_CP014222
Coordinates   2177436..2178788 (-) Length   450 a.a.
NCBI ID   WP_046351278.1    Uniprot ID   A0A0X8GPW2
Organism   Janthinobacterium sp. B9-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2172436..2183788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VN23_RS09750 (VN23_09750) - 2173245..2173430 (+) 186 WP_046351283.1 DUF3149 domain-containing protein -
  VN23_RS09755 (VN23_09755) - 2173483..2175108 (-) 1626 WP_046351282.1 hypothetical protein -
  VN23_RS09760 (VN23_09760) - 2175225..2175482 (-) 258 WP_046351281.1 type B 50S ribosomal protein L31 -
  VN23_RS09765 (VN23_09765) rho 2175588..2176844 (-) 1257 WP_046351280.1 transcription termination factor Rho -
  VN23_RS09770 (VN23_09770) trxA 2176970..2177296 (-) 327 WP_046351279.1 thioredoxin TrxA -
  VN23_RS09775 (VN23_09775) radA 2177436..2178788 (-) 1353 WP_046351278.1 DNA repair protein RadA Machinery gene
  VN23_RS09780 (VN23_09780) flgL 2178883..2180337 (-) 1455 WP_046351277.1 flagellar hook-associated protein FlgL -
  VN23_RS09785 (VN23_09785) flgK 2180383..2182620 (-) 2238 WP_052746515.1 flagellar hook-associated protein FlgK -
  VN23_RS09790 (VN23_09790) flgJ 2182715..2183572 (-) 858 WP_046351276.1 flagellar assembly peptidoglycan hydrolase FlgJ -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47727.26 Da        Isoelectric Point: 7.1755

>NTDB_id=169545 VN23_RS09775 WP_046351278.1 2177436..2178788(-) (radA) [Janthinobacterium sp. B9-8]
MAKIRSSFICQLCGSASPKWQGQCPGCGEWNTLQEGVAETAPATRFQSLAADGAIHQLIDVEAAEIPRIATGMAELDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQAMTLLAAERPVLYVSGEESPQQIALRAKRLGLPAGKVALYAEIGLEKILLALEK
VGPQVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRYAKRTGTTIFLVGHVTKDGAIAGPRVLEHIVDAVLYFEGDTH
SSFRLIRAIKNRFGAVNELGVFAMTDKGLREVSNPSALFLSQHKEPVPGSCVLVTQEGTRPLLVEIQALVDDSHSPQPKR
LAVGVEQNRLALLLAVLHRHAGIAAFDQDVFINAVGGVRIAEPAADLAVLLAIVSSLKNRPLPEKLVVFGEVGLAGEVRP
VQRGQERLREAAKLGFTHAIVPKGNRPRQSIEGMTVTLVERLDEAVNAAL

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=169545 VN23_RS09775 WP_046351278.1 2177436..2178788(-) (radA) [Janthinobacterium sp. B9-8]
ATGGCTAAAATCCGATCTTCTTTTATTTGTCAGCTCTGTGGTTCTGCGTCTCCCAAATGGCAAGGGCAATGCCCCGGCTG
CGGCGAGTGGAATACCCTGCAAGAGGGCGTGGCAGAGACCGCGCCCGCTACTCGCTTTCAGTCTTTGGCGGCTGATGGCG
CAATTCACCAGCTCATTGATGTAGAAGCCGCAGAAATCCCCCGAATTGCAACGGGCATGGCCGAGCTTGATCGTGTATTG
GGTGGTGGTCTGGTGCCCGGTGGCGTGGTGCTGATTGGGGGTGATCCCGGTATTGGTAAATCAACGCTCTTGCTGCAAGC
CATGACTTTGCTTGCGGCTGAACGGCCGGTTTTGTATGTGTCGGGTGAAGAATCCCCACAACAAATCGCCCTGCGTGCCA
AACGCTTGGGTTTGCCTGCCGGTAAAGTAGCGCTTTATGCTGAAATTGGCTTAGAAAAAATTTTGCTGGCACTCGAAAAA
GTCGGCCCGCAAGTCGCGGTGATTGACTCGATTCAAACGGTTTATTCTGAGGCGCTGACTTCTGCTCCGGGCAGCGTGGC
GCAGGTGAGGGAATGTGCTGCGCAGCTCACACGCTATGCCAAGCGCACAGGTACAACTATCTTTTTGGTGGGGCATGTAA
CGAAAGATGGTGCCATTGCCGGGCCGCGTGTGCTTGAGCATATTGTCGATGCGGTGCTTTATTTTGAAGGTGATACGCAC
TCCAGTTTTAGACTGATTCGTGCGATAAAAAATCGATTTGGCGCCGTGAACGAGTTGGGCGTGTTTGCAATGACCGATAA
AGGCCTGCGCGAAGTGTCTAATCCTTCGGCTCTATTTTTGTCGCAGCATAAGGAGCCCGTGCCGGGAAGTTGCGTTTTGG
TGACGCAAGAGGGGACACGGCCCTTACTAGTGGAGATTCAGGCGCTTGTGGATGATTCACACTCGCCTCAGCCTAAGCGT
TTGGCGGTGGGGGTTGAGCAAAATCGTCTAGCCTTGCTGCTGGCGGTATTACATCGCCACGCAGGGATCGCTGCATTTGA
TCAGGATGTATTTATTAATGCGGTGGGCGGTGTGCGGATTGCCGAGCCTGCGGCAGACTTAGCGGTTTTATTGGCAATTG
TGTCTTCTTTAAAAAACCGCCCGCTACCAGAAAAATTAGTTGTATTTGGTGAGGTAGGGCTGGCGGGCGAAGTGAGGCCA
GTACAAAGGGGGCAGGAGCGCTTGCGTGAGGCGGCTAAGCTGGGCTTTACCCACGCGATCGTGCCTAAAGGCAATCGCCC
CCGGCAAAGTATTGAGGGCATGACGGTGACGCTGGTTGAGCGTTTAGACGAGGCGGTTAACGCGGCTCTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-217)

Subunit ChlI of Mg-chelatase (ChlI)

(358-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8GPW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.913

100

0.5
  radA Streptococcus mitis NCTC 12261

47.903

100

0.482
  radA Streptococcus mitis SK321

47.903

100

0.482
  radA Streptococcus pneumoniae Rx1

48.741

97.111

0.473
  radA Streptococcus pneumoniae D39

48.741

97.111

0.473
  radA Streptococcus pneumoniae R6

48.741

97.111

0.473
  radA Streptococcus pneumoniae TIGR4

48.741

97.111

0.473

Multiple sequence alignment