Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BJK08_RS12510 Genome accession   NZ_CP017602
Coordinates   2777673..2778356 (+) Length   227 a.a.
NCBI ID   WP_027227518.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5945     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2772673..2783356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJK08_RS12490 (BJK08_12285) - 2772682..2774397 (+) 1716 WP_027227514.1 tetratricopeptide repeat protein -
  BJK08_RS12495 (BJK08_12290) - 2774526..2775914 (-) 1389 WP_027227515.1 phosphomannomutase/phosphoglucomutase -
  BJK08_RS12500 (BJK08_12295) dut 2775915..2776373 (-) 459 WP_027227516.1 dUTP diphosphatase -
  BJK08_RS12505 (BJK08_12300) coaBC 2776400..2777596 (-) 1197 WP_027227517.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BJK08_RS12510 (BJK08_12305) radC 2777673..2778356 (+) 684 WP_027227518.1 RadC family protein Machinery gene
  BJK08_RS12520 (BJK08_12315) lepB 2778697..2782581 (+) 3885 WP_027227520.1 Dot/Icm T4SS GTPase-activating effector LepB -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25733.37 Da        Isoelectric Point: 6.6922

>NTDB_id=169519 BJK08_RS12510 WP_027227518.1 2777673..2778356(+) (radC) [Legionella pneumophila strain D5945]
MMFAQTAQQLDLREKLLTNGVQSLSDIELLAVFISSGNSKKSCLQLAYELTKHLGNLRNILNTDLQSFKSIQGLGEVRYA
QLQAAKEICHRSDFIHLQKEIQLTNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVHPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=169519 BJK08_RS12510 WP_027227518.1 2777673..2778356(+) (radC) [Legionella pneumophila strain D5945]
ATGATGTTTGCCCAAACAGCGCAACAACTTGACTTGCGCGAAAAACTACTTACTAATGGAGTGCAAAGCCTCTCTGATAT
CGAACTCTTAGCCGTTTTTATCAGTTCTGGTAACAGTAAAAAATCTTGCTTGCAATTAGCTTATGAGCTTACTAAACACT
TGGGAAATTTACGTAATATCCTCAATACTGATCTGCAAAGTTTTAAATCAATCCAGGGATTAGGAGAAGTTCGCTATGCG
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTTATTCATCTGCAAAAAGAAATACAGTTAACTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAACGATTGCGAGACTATAAAAATGAAACCTTTGCCGCACTCTTTCTGGATAATCAAC
ACCGAATCATTGCTTATGAAGAATTATTTTCAGGGACCATCAACACAGCAACAGTCCATCCCAGACCTATTGTAGAACGT
GTACTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATCT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

41.964

98.678

0.414