Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AXA63_RS07045 | Genome accession | NZ_CP014215 |
| Coordinates | 1458818..1459198 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain YU-R612 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1453818..1464198
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXA63_RS07015 (AXA63_07015) | kdsB | 1454721..1455482 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| AXA63_RS07020 (AXA63_07020) | - | 1455494..1456474 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| AXA63_RS07025 (AXA63_07025) | - | 1456486..1456827 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AXA63_RS07030 (AXA63_07030) | - | 1456845..1457618 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| AXA63_RS07035 (AXA63_07035) | - | 1457656..1458264 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AXA63_RS07040 (AXA63_07040) | - | 1458274..1458828 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| AXA63_RS07045 (AXA63_07045) | xcpV | 1458818..1459198 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AXA63_RS07050 (AXA63_07050) | xcpW | 1459198..1459899 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AXA63_RS07055 (AXA63_07055) | gspK | 1459899..1460858 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| AXA63_RS07060 (AXA63_07060) | - | 1461089..1461685 (+) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| AXA63_RS07065 (AXA63_07065) | ung | 1461736..1462449 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| AXA63_RS07070 (AXA63_07070) | - | 1462446..1463570 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AXA63_RS07075 (AXA63_07075) | tadA | 1463577..1464080 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=169482 AXA63_RS07045 WP_000836911.1 1458818..1459198(+) (xcpV) [Acinetobacter baumannii strain YU-R612]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=169482 AXA63_RS07045 WP_000836911.1 1458818..1459198(+) (xcpV) [Acinetobacter baumannii strain YU-R612]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |