Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BJK09_RS12505 Genome accession   NZ_CP017601
Coordinates   2776025..2776708 (+) Length   227 a.a.
NCBI ID   WP_027227518.1    Uniprot ID   -
Organism   Legionella pneumophila strain D6026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2771025..2781708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJK09_RS12485 (BJK09_12290) - 2771034..2772749 (+) 1716 WP_027227514.1 tetratricopeptide repeat protein -
  BJK09_RS12490 (BJK09_12295) - 2772878..2774266 (-) 1389 WP_027227515.1 phosphomannomutase/phosphoglucomutase -
  BJK09_RS12495 (BJK09_12300) dut 2774267..2774725 (-) 459 WP_027227516.1 dUTP diphosphatase -
  BJK09_RS12500 (BJK09_12305) coaBC 2774752..2775948 (-) 1197 WP_027227517.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BJK09_RS12505 (BJK09_12310) radC 2776025..2776708 (+) 684 WP_027227518.1 RadC family protein Machinery gene
  BJK09_RS12515 (BJK09_12320) lepB 2777049..2780933 (+) 3885 WP_027227520.1 Dot/Icm T4SS GTPase-activating effector LepB -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25733.37 Da        Isoelectric Point: 6.6922

>NTDB_id=169449 BJK09_RS12505 WP_027227518.1 2776025..2776708(+) (radC) [Legionella pneumophila strain D6026]
MMFAQTAQQLDLREKLLTNGVQSLSDIELLAVFISSGNSKKSCLQLAYELTKHLGNLRNILNTDLQSFKSIQGLGEVRYA
QLQAAKEICHRSDFIHLQKEIQLTNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVHPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=169449 BJK09_RS12505 WP_027227518.1 2776025..2776708(+) (radC) [Legionella pneumophila strain D6026]
ATGATGTTTGCCCAAACAGCGCAACAACTTGACTTGCGCGAAAAACTACTTACTAATGGAGTGCAAAGCCTCTCTGATAT
CGAACTCTTAGCCGTTTTTATCAGTTCTGGTAACAGTAAAAAATCTTGCTTGCAATTAGCTTATGAGCTTACTAAACACT
TGGGAAATTTACGTAATATCCTCAATACTGATCTGCAAAGTTTTAAATCAATCCAGGGATTAGGAGAAGTTCGCTATGCG
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTTATTCATCTGCAAAAAGAAATACAGTTAACTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAACGATTGCGAGACTATAAAAATGAAACCTTTGCCGCACTCTTTCTGGATAATCAAC
ACCGAATCATTGCTTATGAAGAATTATTTTCAGGGACCATCAACACAGCAACAGTCCATCCCAGACCTATTGTAGAACGT
GTACTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATCT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

41.964

98.678

0.414