Detailed information NTG0169360

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: A4W85_RS05450
• Genome accession: NZ_CP017570
• Coordinates: 1057680..1060274 (-)
• Length: 864 a.a.
• NCBI ID: WP_056946655.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain TMW 1.578
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1052680..1065274

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W85_RS05425	-	1053489..1053665 (+)	177	WP_011374737.1	YjzD family protein	-
A4W85_RS05430 (A4W85_05375)	-	1053715..1054590 (-)	876	WP_016265192.1	hypothetical protein	-
A4W85_RS05435 (A4W85_05380)	yjeM	1054740..1056272 (-)	1533	WP_056946652.1	glutamate/gamma-aminobutyrate family transporter YjeM	-
A4W85_RS05440 (A4W85_05385)	-	1056470..1057024 (-)	555	WP_011374740.1	DUF1836 domain-containing protein	-
A4W85_RS05445 (A4W85_05390)	rpmF	1057131..1057313 (-)	183	WP_004270395.1	50S ribosomal protein L32	-
A4W85_RS05450 (A4W85_05395)	clpC	1057680..1060274 (-)	2595	WP_056946655.1	ATP-dependent chaperone ClpB	Regulator
A4W85_RS05455 (A4W85_05400)	-	1060449..1060847 (-)	399	WP_011374742.1	LapA family protein	-
A4W85_RS05460 (A4W85_05405)	-	1060856..1061665 (-)	810	WP_011374743.1	SDR family NAD(P)-dependent oxidoreductase	-
A4W85_RS05465 (A4W85_05410)	rnz	1061671..1062609 (-)	939	WP_011374744.1	ribonuclease Z	-
A4W85_RS05470 (A4W85_05415)	-	1062644..1064572 (-)	1929	WP_011374745.1	acyltransferase family protein	-

Sequence

Protein

• Length: 864 a.a.
• Molecular weight: 96985.07 Da
• Isoelectric Point: 4.7035

>NTDB_id=169360 A4W85_RS05450 WP_056946655.1 1057680..1060274(-) (clpC) [Latilactobacillus sakei strain TMW 1.578]
MNPEQMTQAVQDAIAEAQNIAKTRHQTEIDVPHLFKYLIQPQQLGRQIYQEAGIDLTALESEIDREIDTIPTVEGQTNYG
QNISQNLYQVLNAAQTYMQEFQDEFLSTETVILGLMKSKYNPLVQFLQKNNVTTKQLKDIITKLRGGERVTSKNQEDNYQ
ALEKYGTDLVKAVREGKMDPVIGRDEEIRNVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPDNLKDKTIVS
LDMGSLIAGAKYRGEFEERLKAVLKEVKKSEGRILVFIDEIHTIVGAGKTEGSMDAGNLLKPMLARGELHMIGATTLDEY
RQNIEKDKALERRFQKVLIQEPTVEDTISILRGLKERFEIFHGVRIHDNALVAAATLSNRYITDRFLPDKAIDLVDEASA
NINVEMNSQPTELDQATRQLMQLEIEEAALKNETDAASQKRLAETQKQLADLRETTNSLKMRWETEKADLNKINDKKEEL
DQAKRQLEDAQSNYDLETAAKLQHATIPQLEQDLADLEKAEKPEDWMVQESVTENEIATVVSSQTGIPVAKLVAGDRQKL
LQLADHLHERVIGQDQAVDAVTDAVLRARAGLQDPNRPLGSFLFLGPTGVGKTELAKALAEDLFDSERHMVRIDMSEYME
KYSVSRLVGAAPGYVGYEEGGQLTEAVRRNPYTIVLLDEIEKAHPDVFNILLQVLDDGRLTDSQGRTIDFKNTIIIMTSN
LGSEILLDGVDDQGQISKEAANSVQTLIQTKFKPEFLNRIDDTIMFTPLSLQDVEQIVVKMLADLSHRLADQEITLTISE
DAKLWVAKEGYDPAFGARPLRRYITNRIETPLAKEIIAGNVLPNTTVEIGLKDNQLVFENKATD

Nucleotide

• Length: 2595 bp

>NTDB_id=169360 A4W85_RS05450 WP_056946655.1 1057680..1060274(-) (clpC) [Latilactobacillus sakei strain TMW 1.578]
ATGAATCCAGAACAAATGACACAAGCTGTTCAAGATGCAATTGCAGAAGCACAAAATATTGCAAAAACGCGTCATCAAAC
AGAAATCGATGTCCCACATTTATTTAAATATTTAATTCAACCCCAACAACTGGGTCGGCAAATCTATCAGGAAGCGGGAA
TTGATTTAACCGCACTTGAAAGTGAAATTGATCGCGAGATTGATACGATTCCAACAGTTGAAGGTCAAACAAACTATGGT
CAAAATATTTCACAAAATCTCTATCAAGTTTTGAACGCGGCTCAAACTTACATGCAAGAGTTTCAAGATGAATTTTTATC
AACTGAAACGGTTATTTTAGGGTTGATGAAGTCTAAATACAATCCGTTAGTACAATTTTTACAAAAAAATAACGTCACGA
CTAAACAATTAAAAGATATTATTACCAAATTAAGAGGAGGCGAGCGTGTGACATCTAAAAACCAAGAAGATAACTACCAA
GCGCTTGAAAAATACGGCACTGATTTAGTGAAAGCTGTTCGTGAAGGTAAGATGGATCCCGTCATTGGTCGGGATGAAGA
AATTAGAAACGTCATCCGGATTCTTTCTAGAAAGACCAAGAATAACCCAGTTTTAATCGGCGAACCCGGTGTTGGTAAAA
CAGCGATTGTTGAAGGCTTAGCCCAACGAATCGTTAGAAAAGATGTGCCTGATAACTTAAAGGATAAAACCATCGTCTCA
CTTGATATGGGGAGCTTAATTGCGGGTGCTAAATATCGTGGTGAGTTTGAAGAACGACTAAAGGCGGTCTTAAAAGAAGT
TAAGAAGAGTGAAGGTCGGATTTTAGTTTTCATCGACGAAATTCACACAATCGTTGGTGCTGGGAAGACTGAAGGCAGCA
TGGACGCCGGTAATCTTTTGAAACCGATGTTAGCGCGTGGCGAATTACACATGATTGGCGCGACAACGCTTGACGAATAT
CGTCAAAACATTGAAAAAGATAAAGCCCTCGAAAGACGATTCCAAAAAGTGTTAATTCAAGAACCAACCGTTGAAGATAC
GATTAGTATTTTGCGGGGGTTAAAGGAACGTTTCGAAATTTTCCACGGTGTTCGTATCCATGATAATGCCCTAGTGGCGG
CTGCAACGTTATCTAACCGCTACATCACAGATCGCTTCTTACCTGATAAGGCAATCGATTTAGTCGATGAAGCGAGTGCT
AATATCAACGTTGAAATGAATTCGCAACCCACTGAGCTCGATCAAGCAACGCGGCAATTAATGCAATTGGAAATTGAAGA
AGCGGCATTGAAGAATGAAACGGATGCGGCTTCACAAAAACGATTAGCCGAAACGCAAAAACAATTAGCTGATTTACGGG
AAACGACGAATAGTTTGAAGATGCGTTGGGAAACCGAAAAAGCTGATTTGAACAAGATTAACGACAAAAAGGAAGAATTA
GACCAGGCAAAACGGCAATTAGAAGATGCCCAAAGTAACTACGATTTGGAAACAGCTGCTAAATTGCAACACGCCACCAT
TCCGCAATTGGAACAAGATCTTGCTGACCTTGAAAAGGCTGAAAAACCAGAGGATTGGATGGTTCAAGAATCAGTTACCG
AAAACGAAATTGCGACAGTTGTTAGTTCGCAAACTGGGATTCCAGTCGCTAAATTAGTAGCAGGTGATCGGCAAAAACTA
TTACAATTAGCTGATCATTTACACGAACGGGTAATTGGTCAAGACCAAGCTGTTGATGCGGTCACAGATGCCGTTTTAAG
AGCGCGTGCTGGCTTGCAAGACCCTAATAGACCTTTAGGCTCATTCTTGTTCTTAGGCCCTACTGGGGTTGGTAAAACGG
AATTAGCTAAGGCTTTAGCTGAAGACCTCTTCGATTCTGAGCGACACATGGTCCGAATCGATATGAGTGAATACATGGAG
AAATACTCAGTATCGCGACTTGTTGGTGCGGCACCTGGTTATGTCGGTTATGAAGAAGGCGGTCAATTAACGGAAGCTGT
TCGTCGTAATCCATATACAATTGTCTTGTTAGATGAAATTGAAAAGGCCCATCCAGATGTCTTCAATATCCTTTTACAAG
TCTTAGATGATGGTCGTTTGACCGACTCACAAGGGCGTACAATCGACTTTAAGAACACAATTATCATCATGACCTCTAAC
CTGGGTTCTGAAATCCTCTTGGACGGTGTTGATGATCAAGGTCAAATTTCAAAAGAAGCAGCTAATAGCGTTCAAACCTT
AATTCAAACGAAATTTAAGCCGGAATTCTTGAACCGAATTGATGATACGATTATGTTTACGCCATTGAGCTTGCAAGATG
TCGAACAAATTGTAGTTAAAATGTTGGCTGATTTATCACATCGTTTAGCAGATCAAGAAATCACATTGACGATTTCTGAA
GACGCTAAGTTATGGGTCGCTAAAGAAGGTTATGATCCAGCGTTTGGGGCACGACCATTACGGCGTTATATTACAAATCG
GATTGAAACACCGTTGGCCAAAGAAATTATTGCCGGAAACGTTTTACCTAACACAACAGTTGAAATTGGTCTAAAAGACA
ATCAATTAGTATTTGAAAACAAAGCAACTGACTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (597-762)

• AAA lid domain (AAA_lid_9) (343-445)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (769-849)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-67)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-146)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-337)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	42.105	100	0.426
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.045	91.667	0.385
clpC	Lactococcus lactis subsp. cremoris KW2	42.161	87.847	0.37
clpE	Streptococcus mutans UA159	47.251	77.894	0.368