Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   A4W85_RS00090 Genome accession   NZ_CP017570
Coordinates   20243..21118 (+) Length   291 a.a.
NCBI ID   WP_016264319.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.578     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 15243..26118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W85_RS00070 (A4W85_00070) - 16126..17466 (-) 1341 WP_011373730.1 nucleobase:cation symporter-2 family protein -
  A4W85_RS00075 (A4W85_00075) rsmG 17835..18575 (+) 741 WP_011373731.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  A4W85_RS00080 (A4W85_00080) noc 18575..19474 (+) 900 WP_076647658.1 nucleoid occlusion protein -
  A4W85_RS00085 (A4W85_00085) - 19486..20253 (+) 768 WP_016264318.1 ParA family protein -
  A4W85_RS00090 (A4W85_00090) spo0J 20243..21118 (+) 876 WP_016264319.1 ParB/RepB/Spo0J family partition protein Regulator
  A4W85_RS00095 (A4W85_00095) - 21137..21385 (+) 249 WP_011373735.1 DUF951 domain-containing protein -
  A4W85_RS00100 (A4W85_00100) ychF 21409..22509 (+) 1101 WP_056946778.1 redox-regulated ATPase YchF -
  A4W85_RS00105 (A4W85_00105) - 22527..23201 (+) 675 WP_056946775.1 DUF1129 domain-containing protein -
  A4W85_RS00110 (A4W85_00110) - 23238..24002 (+) 765 WP_251945016.1 prolyl oligopeptidase family serine peptidase -
  A4W85_RS00115 (A4W85_00115) - 24380..25048 (+) 669 WP_056946767.1 HAD hydrolase-like protein -
  A4W85_RS00120 (A4W85_00120) nrdI 25045..25511 (-) 467 Protein_23 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32411.38 Da        Isoelectric Point: 9.8304

>NTDB_id=169316 A4W85_RS00090 WP_016264319.1 20243..21118(+) (spo0J) [Latilactobacillus sakei strain TMW 1.578]
MVNKNGKGLGRGLEAVFSAFEGPNKNRADELVEEIALEDIRPNPYQPRKTFDEAALAELAASIKKSGVFQPIIVRKSING
YELIAGERRFRASKLAGKTTIPAITRQFDEEAMMEIAVLENLQREDLTPLEEAQAYDTLLKKLNLTQAEVSERLGKSRPY
IANYLRLLGLPADVKQLLQEGQLSMGQARTLLSLKKKSQISALAKRTIAESLTVRQLEQLVNQMNQTKAAKVAKTKIKSP
YIQASENQLVDKFDTKVNIAMNSKGRGKIEIDYGTVEDLNRILALLDVNID

Nucleotide


Download         Length: 876 bp        

>NTDB_id=169316 A4W85_RS00090 WP_016264319.1 20243..21118(+) (spo0J) [Latilactobacillus sakei strain TMW 1.578]
ATGGTCAATAAAAATGGTAAAGGACTCGGTCGAGGACTCGAAGCTGTTTTTTCAGCATTTGAAGGACCCAATAAGAATCG
TGCGGATGAACTCGTTGAAGAGATTGCCCTCGAGGATATTCGTCCCAATCCTTATCAACCACGTAAAACGTTTGATGAGG
CAGCACTAGCAGAACTTGCTGCTTCCATTAAAAAATCAGGCGTTTTCCAACCGATTATTGTGCGTAAAAGCATTAATGGT
TACGAATTAATCGCTGGCGAACGCCGTTTTCGTGCTTCTAAATTAGCTGGTAAAACTACGATTCCAGCGATTACGCGTCA
ATTCGATGAAGAAGCGATGATGGAAATTGCGGTCTTAGAAAATCTTCAACGGGAAGATTTAACACCGCTAGAAGAAGCAC
AAGCCTATGACACCCTTTTGAAGAAGTTAAACTTAACGCAAGCTGAAGTGTCAGAACGCTTAGGCAAGAGTCGCCCTTAC
ATTGCCAACTACTTACGCCTGTTGGGCTTGCCAGCAGATGTTAAGCAATTGTTGCAAGAAGGCCAACTCTCAATGGGACA
AGCACGGACGCTTTTATCATTGAAGAAAAAGAGTCAAATTAGCGCCCTCGCCAAGCGGACGATTGCCGAAAGTTTAACGG
TGCGCCAATTAGAACAACTCGTCAACCAAATGAATCAAACCAAAGCGGCTAAAGTTGCTAAGACTAAGATTAAATCACCT
TACATTCAAGCGAGTGAAAACCAATTAGTCGATAAATTCGATACCAAGGTTAATATTGCGATGAACAGTAAGGGCCGGGG
TAAAATCGAAATTGATTACGGCACGGTAGAGGATTTAAACCGAATCTTGGCTTTACTAGATGTCAATATTGATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(139-166)

HTH domain found in ParB protein (HTH_ParB)

(173-223)

ParB/Sulfiredoxin domain (ParB_N)

(33-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.629

86.254

0.368

Multiple sequence alignment