Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   A4W84_RS04955 Genome accession   NZ_CP017568
Coordinates   966422..967480 (+) Length   352 a.a.
NCBI ID   WP_011374669.1    Uniprot ID   Q38X12
Organism   Latilactobacillus sakei strain TMW 1.417     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 961422..972480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W84_RS04930 (A4W84_04855) - 961716..962216 (-) 501 WP_251907999.1 DUF1836 domain-containing protein -
  A4W84_RS04935 (A4W84_04860) trhA 962377..963015 (+) 639 WP_016265118.1 PAQR family membrane homeostasis protein TrhA -
  A4W84_RS04940 (A4W84_04865) - 963044..963886 (+) 843 WP_056947629.1 DegV family protein -
  A4W84_RS04945 (A4W84_04870) - 964012..964593 (+) 582 WP_011374667.1 TetR/AcrR family transcriptional regulator -
  A4W84_RS04950 (A4W84_04875) - 964595..965602 (+) 1008 WP_011374668.1 NADP-dependent oxidoreductase -
  A4W84_RS04955 (A4W84_04880) xerS 966422..967480 (+) 1059 WP_011374669.1 tyrosine recombinase XerS Machinery gene
  A4W84_RS04960 (A4W84_04885) thiT 967694..968296 (+) 603 WP_011374670.1 energy-coupled thiamine transporter ThiT -
  A4W84_RS04965 (A4W84_04890) - 968336..970129 (-) 1794 WP_041821096.1 heavy metal translocating P-type ATPase -
  A4W84_RS04970 (A4W84_04895) - 970230..970583 (-) 354 WP_056947626.1 hypothetical protein -
  A4W84_RS04975 (A4W84_04900) - 970640..971563 (-) 924 WP_011374673.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 40804.78 Da        Isoelectric Point: 9.2979

>NTDB_id=169274 A4W84_RS04955 WP_011374669.1 966422..967480(+) (xerS) [Latilactobacillus sakei strain TMW 1.417]
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKVNNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFITFMQVDYPSALSNRQLASYKQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=169274 A4W84_RS04955 WP_011374669.1 966422..967480(+) (xerS) [Latilactobacillus sakei strain TMW 1.417]
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGTAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCTGATGGCGAACCTTATTTTTACCGGAACGTCA
TGAAAAAAGTTAAACTCCTGAAATCTTCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGC
GATAAAAAACACGACTTCATTACCTTTATGCAAGTCGACTATCCCAGTGCGCTCTCTAATCGCCAACTCGCTTCTTATAA
GCAAAATTGTGAACGAGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(191-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38X12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.787

100

0.463