Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   A4W84_RS01735 Genome accession   NZ_CP017568
Coordinates   356332..358629 (-) Length   765 a.a.
NCBI ID   WP_251908138.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.417     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 351332..363629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W84_RS01705 (A4W84_01665) - 352062..352415 (+) 354 WP_011374029.1 PqqD family protein -
  A4W84_RS01710 (A4W84_01670) - 352473..353894 (+) 1422 WP_251908137.1 C69 family dipeptidase -
  A4W84_RS01715 (A4W84_01675) - 353968..354819 (+) 852 WP_056947760.1 YitT family protein -
  A4W84_RS01720 (A4W84_01680) - 354868..355083 (-) 216 WP_011374032.1 DUF2187 family protein -
  A4W84_RS01725 (A4W84_01685) - 355282..356124 (+) 843 WP_099947533.1 Cof-type HAD-IIB family hydrolase -
  A4W84_RS01735 (A4W84_01695) helD 356332..358629 (-) 2298 WP_251908138.1 RNA polymerase recycling motor HelD Machinery gene
  A4W84_RS01740 (A4W84_01700) trpS 358985..360001 (+) 1017 WP_011374036.1 tryptophan--tRNA ligase -
  A4W84_RS01745 (A4W84_01705) - 360210..361577 (+) 1368 WP_011374037.1 MATE family efflux transporter -
  A4W84_RS01750 (A4W84_01710) - 361570..362106 (+) 537 WP_011374038.1 DNA/RNA non-specific endonuclease -
  A4W84_RS01755 - 362107..362367 (+) 261 WP_331713297.1 DNA/RNA non-specific endonuclease -
  A4W84_RS01760 (A4W84_01715) - 362464..363066 (+) 603 WP_011374040.1 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 765 a.a.        Molecular weight: 87049.26 Da        Isoelectric Point: 4.6082

>NTDB_id=169246 A4W84_RS01735 WP_251908138.1 356332..358629(-) (helD) [Latilactobacillus sakei strain TMW 1.417]
MLQEDTQQQEQARVDLTVDQVNQRLTVINQQLDNAYNETKDIEQRYGDTTKVNITEVDDRMETNAAVQQQKQLVAAAVEN
EKLLTSQQKRLTDLVDSPYFGRIDINEDGEEESLYIGTATFINEQDQFLVYDWRAPIASIYYNGTLGTVSYDTPNGPVKV
DLTLKRQFKIKNGQIEHLFDTNETVGDELLQAILGQQSDEYMQNIVATIQKEQNDIIRDTTADLLIVQGVAGSGKTSAVL
QRIAFLLYHSRSHLEADQMVLFSPNRLFSHYISEVLPSLGEKNMRQVTMAEFLSHRFSGLQVETLFDRFEKDQASFPEMT
QAIRRFKESAPFMQQITDYVKQVSTQPLAFNDLYFEDRPFFTKAQINKIYLDLPHNMRPGDKFIATKNTLIKRLKRQINL
EVHLDWVAEKIDTLSDDDYRAIVGDREFDSGDLEQAFIAREIVQNYFADLYDAIYNDYFLDVYTEYQNFLRTACPATIPV
AVWEAMIETVAQNNERHLVGLSDAAPILYLRDLLTDSGQNHSIQYLFVDEMQDYSIAQFVYLQHAFPNAKFTVLGDYAQD
VFTATYQAGNFIERLCAAFPKLKTNQISLTKSYRATAPITNFAKALLPKETALQAFSRDGRLPRVITATKEASLNALTQE
IFHLQKRHATIAILTKDQQTARQLFASLTPDDQVTLISETTRSLPKGVLVLPLYLAKGLEFDAVIGYDISATTFGQSSDV
DLLYTLMTRAMHDLTLLGIGTLSPLITSLDPQYYQNITTTKETIA

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=169246 A4W84_RS01735 WP_251908138.1 356332..358629(-) (helD) [Latilactobacillus sakei strain TMW 1.417]
ATGCTACAAGAAGATACGCAACAACAAGAACAAGCCCGTGTTGATTTAACGGTTGACCAAGTCAATCAACGGCTAACGGT
TATCAACCAGCAATTGGACAATGCCTATAATGAAACTAAAGATATTGAACAACGTTATGGTGATACTACCAAGGTCAATA
TTACGGAGGTCGATGACCGGATGGAAACCAATGCCGCCGTCCAACAGCAAAAACAACTAGTCGCAGCGGCCGTTGAAAAC
GAAAAACTCCTAACGTCACAACAAAAACGGCTAACGGATTTAGTCGACTCTCCTTATTTTGGTCGGATTGATATCAATGA
AGACGGTGAGGAAGAATCACTCTACATCGGGACCGCCACTTTTATCAACGAGCAAGACCAATTCTTGGTTTACGATTGGC
GAGCACCCATTGCTAGTATTTACTATAATGGCACATTAGGGACCGTCAGTTACGACACGCCTAATGGCCCCGTTAAAGTT
GATTTAACACTAAAACGACAGTTCAAGATTAAAAACGGTCAAATTGAACATCTTTTTGATACAAACGAAACAGTTGGCGA
CGAACTCCTGCAAGCCATTCTCGGCCAACAAAGTGATGAGTACATGCAAAATATCGTTGCAACAATTCAAAAAGAACAAA
ATGATATTATCCGTGATACGACTGCCGATTTACTAATTGTCCAAGGCGTCGCTGGCAGCGGTAAAACCTCCGCTGTTTTA
CAACGCATCGCTTTCTTACTCTATCACAGTCGTAGTCACTTAGAAGCCGATCAAATGGTCCTTTTTTCACCTAATCGCTT
ATTCAGTCACTATATTTCTGAGGTGCTGCCTAGTTTAGGGGAAAAGAATATGCGCCAAGTGACGATGGCTGAATTTTTAA
GTCATCGTTTCTCGGGGCTTCAAGTTGAAACACTCTTCGATCGTTTTGAAAAAGACCAAGCGAGTTTCCCAGAAATGACG
CAAGCAATACGCCGCTTTAAAGAAAGTGCCCCCTTTATGCAACAAATTACGGATTATGTTAAACAGGTTTCTACACAGCC
ATTGGCCTTCAATGACCTCTACTTTGAAGATCGTCCGTTCTTCACAAAAGCGCAAATTAATAAAATTTATCTCGATCTCC
CACATAATATGCGTCCCGGTGATAAATTTATTGCCACTAAAAATACCCTCATTAAACGACTCAAACGCCAAATTAATTTA
GAAGTGCACCTTGATTGGGTCGCTGAAAAAATTGATACCTTATCAGATGATGACTACCGTGCCATCGTCGGTGATCGCGA
ATTTGATTCTGGCGATTTAGAACAAGCATTTATTGCCCGGGAAATTGTTCAAAATTATTTTGCTGATTTATACGATGCTA
TTTATAACGATTACTTTTTGGATGTGTATACTGAATATCAAAACTTCCTACGGACAGCTTGTCCGGCTACAATTCCGGTT
GCCGTTTGGGAAGCAATGATTGAAACAGTCGCTCAAAATAATGAACGCCACCTCGTCGGTTTAAGTGACGCAGCGCCAAT
TCTGTATCTCCGTGATTTATTAACCGATAGTGGTCAAAATCACAGCATTCAATACTTATTCGTCGATGAGATGCAAGATT
ATAGCATTGCGCAATTCGTTTATCTCCAGCATGCTTTCCCGAACGCTAAATTCACCGTGCTCGGCGATTACGCGCAGGAC
GTCTTTACCGCTACTTATCAAGCCGGTAATTTCATTGAACGCCTCTGCGCGGCTTTTCCAAAACTAAAAACTAACCAAAT
TAGTTTGACGAAGAGCTATCGCGCGACTGCCCCCATCACGAATTTCGCAAAAGCCTTATTGCCTAAAGAAACAGCCTTGC
AAGCCTTTAGTCGTGATGGACGGCTCCCTCGTGTCATCACAGCCACTAAGGAAGCTAGTTTAAATGCCTTAACGCAAGAA
ATTTTCCACCTACAAAAACGGCATGCAACTATCGCCATTTTAACCAAGGATCAACAAACGGCGCGCCAACTTTTCGCCAG
CCTGACTCCCGATGATCAGGTAACACTCATCTCCGAAACCACCCGCTCATTACCAAAAGGTGTTTTAGTATTACCGTTAT
ATCTCGCTAAAGGTCTCGAATTCGATGCTGTCATTGGTTACGACATTTCAGCAACCACCTTTGGCCAATCAAGTGACGTT
GACTTACTCTACACACTGATGACGCGTGCCATGCACGACTTAACCTTGTTGGGAATTGGTACCCTCAGCCCACTCATTAC
TAGCCTCGATCCTCAATACTACCAAAACATTACAACCACTAAGGAAACGATTGCCTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(689-736)

AAA domain (AAA_19)

(213-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

36.856

100

0.374