Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RSJ17_RS03465 Genome accession   NZ_CP014176
Coordinates   617496..618863 (+) Length   455 a.a.
NCBI ID   WP_039630624.1    Uniprot ID   A0A0C1U5I3
Organism   Clostridium argentinense strain 89G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 612496..623863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSJ17_RS03445 (RSJ17_03475) - 612649..613107 (+) 459 WP_039630616.1 CtsR family transcriptional regulator -
  RSJ17_RS03450 (RSJ17_03480) - 613133..613639 (+) 507 WP_039630618.1 UvrB/UvrC motif-containing protein -
  RSJ17_RS03455 (RSJ17_03485) - 613660..614688 (+) 1029 WP_039630620.1 protein arginine kinase -
  RSJ17_RS03460 (RSJ17_03490) - 614705..617134 (+) 2430 WP_039630622.1 ATP-dependent Clp protease ATP-binding subunit -
  RSJ17_RS03465 (RSJ17_03495) radA 617496..618863 (+) 1368 WP_039630624.1 DNA repair protein RadA Machinery gene
  RSJ17_RS03470 (RSJ17_03500) disA 618959..620023 (+) 1065 WP_039630626.1 DNA integrity scanning diadenylate cyclase DisA -
  RSJ17_RS03475 (RSJ17_03505) - 620059..620463 (-) 405 WP_039630628.1 hypothetical protein -
  RSJ17_RS03480 (RSJ17_03510) - 620792..621889 (+) 1098 WP_039630631.1 PIN/TRAM domain-containing protein -
  RSJ17_RS03485 (RSJ17_03515) ispD 621898..622593 (+) 696 WP_039630633.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50419.24 Da        Isoelectric Point: 8.0089

>NTDB_id=169245 RSJ17_RS03465 WP_039630624.1 617496..618863(+) (radA) [Clostridium argentinense strain 89G]
MAKVKNIYVCNQCGYESPKWIGKCPSCNNWNTMSEEVKLPSQPQVFNRAVTISGNNKPQNIKDIKSSQYERYNTGITELN
RVLGGGLVKGSLTLISGDPGIGKSTILLQSAKNISDKYGKVLYVSGEESEEQIKMRAERLNSISDNLYIVSETNITTIEN
HVLELEPVFVIIDSIQTLYKSEISSAPGSVSQVRECTNELMRIGKTKGIPLFIVAHVTKQGELAGPRVLEHMVDTVLYFE
GERTQEFRILRTIKNRFGTTSEIGVFEMRQSGLEEILDASSVFLQETSFEQEGSVVIGTIEGTRPLLVEIQALVSETKAV
MPRRTAVGVDNSRMSLILAVLEKKLRIPFYSSDVYINVVGGLNIEGTFGDLGLAVALMSSAKGKEVKLERPLFIGEVGLT
GEVRPISHIDKLVNEGIKMGFKNIIMPLRNKEKIENKKINIIGISNVREVINKVF

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=169245 RSJ17_RS03465 WP_039630624.1 617496..618863(+) (radA) [Clostridium argentinense strain 89G]
ATGGCTAAGGTTAAAAATATATATGTTTGTAATCAATGTGGATATGAATCACCTAAATGGATAGGAAAGTGCCCTAGCTG
TAATAACTGGAATACCATGTCAGAAGAGGTTAAGCTTCCGTCACAACCACAAGTATTTAATAGAGCAGTTACTATAAGTG
GTAATAATAAACCTCAGAATATAAAGGATATTAAGTCTAGCCAATATGAAAGATATAATACTGGAATTACTGAACTTAAT
AGGGTATTAGGTGGAGGATTAGTTAAGGGGTCTTTGACCTTAATATCTGGTGATCCAGGAATAGGAAAATCTACAATATT
ACTTCAAAGCGCTAAAAATATTTCTGATAAATATGGAAAAGTGCTTTATGTATCAGGGGAAGAGTCAGAAGAACAAATAA
AGATGAGGGCCGAAAGATTAAATTCTATAAGTGATAATTTATATATTGTATCTGAAACTAATATTACAACTATAGAAAAT
CATGTTTTAGAGTTAGAGCCTGTATTTGTAATAATTGATTCTATACAAACCTTATATAAAAGTGAAATAAGTTCTGCACC
AGGAAGTGTTTCACAGGTTAGAGAATGCACTAATGAACTTATGAGAATAGGTAAAACTAAGGGAATACCCCTATTTATAG
TTGCTCATGTTACGAAGCAAGGAGAGCTTGCAGGTCCTAGAGTTTTAGAACATATGGTAGATACAGTTTTATACTTTGAA
GGGGAAAGAACCCAAGAATTTAGAATACTAAGAACTATAAAAAATCGTTTTGGAACAACTAGTGAAATTGGCGTATTTGA
AATGAGACAAAGTGGACTTGAGGAAATTTTAGATGCTTCGAGTGTATTTTTACAGGAGACTTCTTTTGAGCAAGAAGGAT
CAGTGGTAATAGGAACTATTGAAGGAACAAGACCATTACTTGTAGAAATACAAGCATTAGTAAGTGAAACTAAAGCTGTT
ATGCCTAGAAGAACTGCAGTAGGAGTAGATAACTCAAGAATGAGTCTTATATTAGCAGTTCTAGAGAAAAAATTAAGAAT
TCCTTTTTATAGTAGTGATGTTTATATAAATGTAGTAGGGGGATTAAATATAGAAGGAACCTTTGGAGATTTAGGTCTTG
CAGTAGCTCTTATGTCTAGTGCTAAAGGAAAAGAAGTTAAACTTGAAAGACCGTTATTTATAGGAGAAGTAGGCTTAACA
GGAGAGGTACGTCCAATATCACATATAGATAAACTAGTAAATGAAGGCATAAAAATGGGATTTAAAAACATAATTATGCC
GCTAAGAAATAAAGAAAAAATAGAAAACAAGAAGATAAATATAATAGGAATATCAAATGTTAGAGAAGTAATTAATAAGG
TTTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-221)

Subunit ChlI of Mg-chelatase (ChlI)

(345-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1U5I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.402

100

0.527
  radA Streptococcus mitis NCTC 12261

49.891

100

0.501
  radA Streptococcus pneumoniae Rx1

49.891

100

0.501
  radA Streptococcus pneumoniae D39

49.891

100

0.501
  radA Streptococcus pneumoniae R6

49.891

100

0.501
  radA Streptococcus pneumoniae TIGR4

49.891

100

0.501
  radA Streptococcus mitis SK321

49.672

100

0.499

Multiple sequence alignment