Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   A4W83_RS07570 Genome accession   NZ_CP017566
Coordinates   1485282..1486088 (-) Length   268 a.a.
NCBI ID   WP_016265510.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1480282..1491088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W83_RS07545 (A4W83_07490) - 1480669..1481100 (+) 432 WP_011375163.1 GNAT family N-acetyltransferase -
  A4W83_RS07550 (A4W83_07495) - 1481176..1481649 (+) 474 WP_035146355.1 hypothetical protein -
  A4W83_RS07555 (A4W83_07500) - 1481800..1483500 (+) 1701 WP_251944726.1 glycosyltransferase family 8 protein -
  A4W83_RS07560 (A4W83_07505) - 1483569..1484105 (-) 537 WP_011375166.1 DUF402 domain-containing protein -
  A4W83_RS07565 (A4W83_07510) mutY 1484192..1485295 (-) 1104 WP_251945360.1 A/G-specific adenine glycosylase -
  A4W83_RS07570 (A4W83_07515) recX 1485282..1486088 (-) 807 WP_016265510.1 recombination regulator RecX Regulator
  A4W83_RS07575 (A4W83_07520) - 1486090..1486269 (-) 180 WP_011375169.1 hypothetical protein -
  A4W83_RS07580 (A4W83_07525) rlmD 1486655..1488046 (+) 1392 WP_011375170.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  A4W83_RS07585 (A4W83_07530) - 1488262..1488768 (-) 507 WP_011375171.1 DUF805 domain-containing protein -
  A4W83_RS07590 (A4W83_07535) - 1488859..1489329 (+) 471 WP_251944728.1 nucleoside 2-deoxyribosyltransferase -
  A4W83_RS07595 (A4W83_07540) - 1489416..1489658 (+) 243 WP_251944730.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31069.99 Da        Isoelectric Point: 6.0698

>NTDB_id=169224 A4W83_RS07570 WP_016265510.1 1485282..1486088(-) (recX) [Latilactobacillus sakei strain TMW 1.114]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QYLRDHEITPEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLSRIIDELALEEDSDSEADALAALGEKKWRRYRLLEPRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=169224 A4W83_RS07570 WP_016265510.1 1485282..1486088(-) (recX) [Latilactobacillus sakei strain TMW 1.114]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGACGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGCGACATTCAAA
AAGAAGACGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAATACTTGCGTGATCATGAAATTACGCCAGAAGGCATTGAAACTAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCAGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCGTTGACGCTATATACAGACGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAACAAAAGATTAAACAGGGCTT
GATGCAAAAGGGCTTTGGTGGTGATAATTTAAGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGTGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTATCGCCTATTAGAACCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
CGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-203)

RecX family (RecX_HTH2)

(204-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

37.643

98.134

0.369