Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RSJ22_RS06265 Genome accession   NZ_CP014174
Coordinates   1166094..1167047 (+) Length   317 a.a.
NCBI ID   WP_024932718.1    Uniprot ID   -
Organism   Clostridium botulinum strain B609     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1161094..1172047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSJ22_RS06240 (RSJ22_06170) - 1161215..1161451 (+) 237 WP_045539315.1 SHOCT domain-containing protein -
  RSJ22_RS06245 (RSJ22_06175) - 1161721..1162422 (+) 702 WP_101514980.1 response regulator transcription factor -
  RSJ22_RS06250 (RSJ22_06180) - 1162422..1163828 (+) 1407 WP_085320518.1 sensor histidine kinase -
  RSJ22_RS06255 (RSJ22_06185) - 1164168..1164854 (-) 687 WP_011987957.1 DNA alkylation repair protein -
  RSJ22_RS06260 (RSJ22_06190) - 1165090..1165848 (-) 759 WP_011948717.1 helix-turn-helix domain-containing protein -
  RSJ22_RS06265 (RSJ22_06195) ceuB 1166094..1167047 (+) 954 WP_024932718.1 ABC transporter permease Machinery gene
  RSJ22_RS06270 (RSJ22_06200) - 1167037..1167987 (+) 951 WP_024932719.1 iron chelate uptake ABC transporter family permease subunit -
  RSJ22_RS06275 (RSJ22_06205) - 1167984..1168739 (+) 756 WP_024932720.1 ABC transporter ATP-binding protein -
  RSJ22_RS06280 (RSJ22_06210) - 1168813..1169757 (+) 945 WP_101514981.1 siderophore ABC transporter substrate-binding protein -
  RSJ22_RS06290 (RSJ22_06220) - 1169959..1170960 (+) 1002 WP_024932721.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34875.24 Da        Isoelectric Point: 9.9543

>NTDB_id=169222 RSJ22_RS06265 WP_024932718.1 1166094..1167047(+) (ceuB) [Clostridium botulinum strain B609]
MKKRYLILALIILSICSIFIGVKDISFVDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYDLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=169222 RSJ22_RS06265 WP_024932718.1 1166094..1167047(+) (ceuB) [Clostridium botulinum strain B609]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TGTAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATCAGTAGAATTCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATGATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAACAAATTCACAGTAGCAGGTATGGGAGAAGATTTTTCTAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGAGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTACTTGGAGCAGTATTTCTCTTAGGCTGTGACATATTAGGTAGATTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGGGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment