Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AWM80_RS11105 Genome accession   NZ_CP014166
Coordinates   2181498..2182118 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain CU1050     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2176498..2187118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWM80_RS11065 (AWM80_11070) ptsA 2177629..2178135 (-) 507 WP_009967573.1 PTS sugar transporter subunit IIA -
  AWM80_RS11070 (AWM80_11075) ypqA 2178273..2178692 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  AWM80_RS11075 (AWM80_11080) sppG 2178713..2179090 (-) 378 WP_004398696.1 YppG family protein -
  AWM80_RS11080 (AWM80_11085) yppF 2179278..2179466 (+) 189 WP_003230690.1 YppF family protein -
  AWM80_RS11085 (AWM80_11090) yppE 2179505..2179876 (-) 372 WP_003246080.1 YppE family protein -
  AWM80_RS11090 (AWM80_11095) yppD 2179922..2180167 (-) 246 WP_004398488.1 YppD family protein -
  AWM80_RS11095 (AWM80_11100) sspM 2180366..2180470 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AWM80_RS11100 (AWM80_11105) yppC 2180495..2181457 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  AWM80_RS11105 (AWM80_11110) recU 2181498..2182118 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  AWM80_RS11110 (AWM80_11115) ponA 2182140..2184884 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  AWM80_RS11115 (AWM80_11120) ypoC 2184960..2185454 (-) 495 WP_009967579.1 YpoC family protein -
  AWM80_RS11120 (AWM80_11125) nth 2185451..2186110 (-) 660 WP_009967580.1 endonuclease III -
  AWM80_RS11125 (AWM80_11130) dnaD 2186129..2186827 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=169125 AWM80_RS11105 WP_004399067.1 2181498..2182118(+) (recU) [Bacillus subtilis subsp. subtilis strain CU1050]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=169125 AWM80_RS11105 WP_004399067.1 2181498..2182118(+) (recU) [Bacillus subtilis subsp. subtilis strain CU1050]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment