Detailed information NTG0169101

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BIZ51_RS06245
• Genome accession: NZ_CP017458
• Coordinates: 1383514..1384539 (+)
• Length: 341 a.a.
• NCBI ID: WP_027226811.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. fraseri strain Dallas 1E
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1378514..1389539

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BIZ51_RS06215 (BIZ51_06140)	-	1378945..1379262 (+)	318	WP_027226805.1	DUF2845 domain-containing protein	-
BIZ51_RS06220 (BIZ51_06145)	-	1379298..1379669 (+)	372	WP_027226806.1	protease inhibitor I42 family protein	-
BIZ51_RS06225 (BIZ51_06150)	-	1379724..1381442 (-)	1719	WP_027226807.1	NAD-dependent malic enzyme	-
BIZ51_RS06230 (BIZ51_06155)	-	1381522..1381905 (+)	384	WP_027226808.1	hypothetical protein	-
BIZ51_RS06235 (BIZ51_06160)	surE	1381908..1382666 (+)	759	WP_027226809.1	5'/3'-nucleotidase SurE	-
BIZ51_RS06240 (BIZ51_06165)	-	1382688..1383428 (+)	741	WP_032830130.1	peptidoglycan DD-metalloendopeptidase family protein	-
BIZ51_RS06245 (BIZ51_06170)	rpoS	1383514..1384539 (+)	1026	WP_027226811.1	RNA polymerase sigma factor RpoS	Regulator
BIZ51_RS06250 (BIZ51_06175)	hmgA	1384682..1385932 (-)	1251	WP_027226812.1	homogentisate 1,2-dioxygenase	-
BIZ51_RS06255 (BIZ51_06180)	-	1386078..1386821 (+)	744	WP_027226813.1	YebC/PmpR family DNA-binding transcriptional regulator	-
BIZ51_RS06260 (BIZ51_06185)	ruvC	1386821..1387345 (+)	525	WP_027226814.1	crossover junction endodeoxyribonuclease RuvC	-
BIZ51_RS06265 (BIZ51_06190)	ruvA	1387342..1387941 (+)	600	WP_027226815.1	Holliday junction branch migration protein RuvA	Machinery gene
BIZ51_RS06270 (BIZ51_06195)	-	1388000..1388320 (+)	321	WP_027226816.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39479.78 Da
• Isoelectric Point: 4.3759

>NTDB_id=169101 BIZ51_RS06245 WP_027226811.1 1383514..1384539(+) (rpoS) [Legionella pneumophila subsp. fraseri strain Dallas 1E]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEELDEFPEFIDEEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=169101 BIZ51_RS06245 WP_027226811.1 1383514..1384539(+) (rpoS) [Legionella pneumophila subsp. fraseri strain Dallas 1E]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAAGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGATTCTTTGCT
GTCAGAAGAAGATGTTGAACCAGATATCGAAAAAATGGAAGAAGAGCTTGATGAGTTTCCAGAGTTTATTGATGAGGAAG
CTTTTCCTTCATTCCAACGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACCTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACAGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTGAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAACTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTTGATCTAATCG
AAGAGGGAAATCTGGGTTTAATGAAATCTGTTGAGAAATTTGATCCCAAGCGAGGGTTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACCATAGAACGTGCCATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTGGTGAAAGA
ACTCAATGTTTATCTTAGAGCAGCAAGACAATTAACGCAAAAACTGGATCATGAACCATCTCCTGAAGAAATAGCAGAAA
TGGTTGATAAGCCTTTGGAGGATGTTCAAAAACTATTGGGCTTGAATGATAAAGTCGCTTCAGTTGATACCCCAATTGGA
TTTGATGAAACCAAATCTTTATTGGATACGATTGCTGATGAAAACAGTTTAAATCCTGCAGAACTATTAACCAATGAGAA
TTTAAGGCAACATATAGAATCTCTTTTGGATAAATTAACTGAGAATCAACAACAGGTTATCGCAAGACGCTTTGGGTTAA
GAGGTTTTGAAAAAGCAACACTTGAGGATGTTGGTAAGGAAATTGATTTGACTCGTGAACGCGTTCGCCAGATTCAGGTT
GAAGCTTTGAAGACGCTAAGAACCTTGTTGGAGCGGGTTGGATTAACGCAAGAGGATTTGTTTTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548