Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   BIZ52_RS13670 Genome accession   NZ_CP017457
Coordinates   3046832..3047623 (-) Length   263 a.a.
NCBI ID   WP_027229124.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain Detroit-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3041832..3052623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIZ52_RS13655 (BIZ52_13495) legS1 3043146..3044303 (-) 1158 WP_027229126.1 Dot/Icm T4SS effector LegS1 -
  BIZ52_RS13665 (BIZ52_13500) dacB 3044947..3046740 (-) 1794 WP_027229125.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  BIZ52_RS13670 (BIZ52_13505) spo0J 3046832..3047623 (-) 792 WP_027229124.1 ParB/RepB/Spo0J family partition protein Regulator
  BIZ52_RS13675 (BIZ52_13510) - 3047738..3048241 (-) 504 WP_027229123.1 hypothetical protein -
  BIZ52_RS13680 (BIZ52_13515) - 3048416..3049165 (-) 750 WP_027229122.1 CPBP family glutamic-type intramembrane protease -
  BIZ52_RS13685 (BIZ52_13520) rsmB 3049162..3050445 (-) 1284 WP_027229121.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  BIZ52_RS13690 (BIZ52_13525) fmt 3050442..3051386 (-) 945 WP_027229120.1 methionyl-tRNA formyltransferase -
  BIZ52_RS13695 (BIZ52_13530) def 3051383..3051895 (-) 513 WP_027229119.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30047.30 Da        Isoelectric Point: 6.2513

>NTDB_id=169067 BIZ52_RS13670 WP_027229124.1 3046832..3047623(-) (spo0J) [Legionella pneumophila subsp. fraseri strain Detroit-1]
MQSRFTYLPITSLQAGQYQPRQDFNATELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLTEIPCLIG
DYSDKQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLVGLNPDQQEMFAHQIIGEEWSVRHLEQEIKSYKNKDMGSPKNPRKDRDIERLQTILAEQVGAPVQIINEGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=169067 BIZ52_RS13670 WP_027229124.1 3046832..3047623(-) (spo0J) [Legionella pneumophila subsp. fraseri strain Detroit-1]
ATGCAATCCCGATTTACTTATTTACCTATTACGAGTCTGCAGGCAGGTCAGTATCAACCCAGACAAGATTTTAATGCAAC
TGAGTTACAGGAATTGGCTCAGTCCATTTCTTCTCAAGGGTTAATTGAACCCTTGGTTGTAAGACCCATTGCAAAAGAGC
GATATGAGATTATTGCAGGGGAAAGAAGATGGCGTGCGGCCAAATTGGCGGGATTAACTGAAATCCCCTGTCTAATTGGT
GACTATAGTGATAAGCAGGCGTGTGCTCTGACTTTAATCGAAAATATTCAGCGCCAGGATTTGAATTTAATTGAGGAAGC
AACTGGTTATAAGCGTTTAATTGAAGAATTTCATTATCATCAGGACGAAATCGCGGCCTTGGTTGGTAAGTCTCGTAGCC
ATGTTGCAAATATTCTTCGCCTCCTTACCTTAACAGATAAGGTTAAACAGTTAGTTCGAGACAAAGTGTTATCTTTTGGA
CATGCTCGCGTATTGGTTGGCTTAAATCCTGATCAGCAAGAAATGTTTGCTCACCAGATTATTGGAGAGGAATGGTCTGT
CAGGCACTTGGAGCAAGAAATTAAATCTTACAAAAATAAAGATATGGGCAGCCCCAAAAATCCGAGGAAAGACAGAGATA
TTGAACGACTACAGACTATCCTGGCCGAGCAAGTGGGTGCTCCTGTACAAATTATAAACGAAGGTGAGGATGGAGGCTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGTTTGGGCTTGCGATATGATTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-96)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

38.077

98.859

0.376