Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BIZ52_RS12655 Genome accession   NZ_CP017457
Coordinates   2832006..2832689 (+) Length   227 a.a.
NCBI ID   WP_027227518.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain Detroit-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2827006..2837689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIZ52_RS12635 (BIZ52_12490) - 2827015..2828730 (+) 1716 WP_027227514.1 tetratricopeptide repeat protein -
  BIZ52_RS12640 (BIZ52_12495) - 2828859..2830247 (-) 1389 WP_027227515.1 phosphomannomutase/phosphoglucomutase -
  BIZ52_RS12645 (BIZ52_12500) dut 2830248..2830706 (-) 459 WP_027227516.1 dUTP diphosphatase -
  BIZ52_RS12650 (BIZ52_12505) coaBC 2830733..2831929 (-) 1197 WP_027227517.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BIZ52_RS12655 (BIZ52_12510) radC 2832006..2832689 (+) 684 WP_027227518.1 DNA repair protein RadC Machinery gene
  BIZ52_RS12665 (BIZ52_12520) lepB 2833030..2836914 (+) 3885 WP_027227520.1 Dot/Icm T4SS GTPase-activating effector LepB -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25733.37 Da        Isoelectric Point: 6.6922

>NTDB_id=169064 BIZ52_RS12655 WP_027227518.1 2832006..2832689(+) (radC) [Legionella pneumophila subsp. fraseri strain Detroit-1]
MMFAQTAQQLDLREKLLTNGVQSLSDIELLAVFISSGNSKKSCLQLAYELTKHLGNLRNILNTDLQSFKSIQGLGEVRYA
QLQAAKEICHRSDFIHLQKEIQLTNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVHPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=169064 BIZ52_RS12655 WP_027227518.1 2832006..2832689(+) (radC) [Legionella pneumophila subsp. fraseri strain Detroit-1]
ATGATGTTTGCCCAAACAGCGCAACAACTTGACTTGCGCGAAAAACTACTTACTAATGGAGTGCAAAGCCTCTCTGATAT
CGAACTCTTAGCCGTTTTTATCAGTTCTGGTAACAGTAAAAAATCTTGCTTGCAATTAGCTTATGAGCTTACTAAACACT
TGGGAAATTTACGTAATATCCTCAATACTGATCTGCAAAGTTTTAAATCAATCCAGGGATTAGGAGAAGTTCGCTATGCG
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTTATTCATCTGCAAAAAGAAATACAGTTAACTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAACGATTGCGAGACTATAAAAATGAAACCTTTGCCGCACTCTTTCTGGATAATCAAC
ACCGAATCATTGCTTATGAAGAATTATTTTCAGGGACCATCAACACAGCAACAGTCCATCCCAGACCTATTGTAGAACGT
GTACTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATCT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

41.964

98.678

0.414