Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AWM76_RS00940 Genome accession   NZ_CP014164
Coordinates   199037..200419 (+) Length   460 a.a.
NCBI ID   WP_003140797.1    Uniprot ID   A0AAU8UIQ4
Organism   Aerococcus viridans strain CCUG4311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 194037..205419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWM76_RS00920 (AWM76_00920) - 195454..195642 (-) 189 WP_003140790.1 hypothetical protein -
  AWM76_RS00925 (AWM76_00925) - 195657..196328 (-) 672 WP_003140791.1 hypothetical protein -
  AWM76_RS00930 (AWM76_00930) - 196755..198347 (+) 1593 WP_420869284.1 alpha-amylase -
  AWM76_RS00935 (AWM76_00935) - 198450..198989 (+) 540 WP_039934533.1 dUTP diphosphatase -
  AWM76_RS00940 (AWM76_00940) radA 199037..200419 (+) 1383 WP_003140797.1 DNA repair protein RadA Machinery gene
  AWM76_RS00945 (AWM76_00945) - 200635..201828 (+) 1194 WP_003140798.1 PIN/TRAM domain-containing protein -
  AWM76_RS00950 (AWM76_00950) gltX 201917..203392 (+) 1476 WP_039934536.1 glutamate--tRNA ligase -
  AWM76_RS00955 (AWM76_00955) istA 203535..204773 (+) 1239 WP_060779304.1 IS21 family transposase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50199.28 Da        Isoelectric Point: 6.4235

>NTDB_id=169061 AWM76_RS00940 WP_003140797.1 199037..200419(+) (radA) [Aerococcus viridans strain CCUG4311]
MAKKTTTRYVCQACGYESVQFYGKCPNCGAWNQMEEERLYGKTIAHPETHAGQANSSRMKPQKLAAVQGEETPRIQTQLG
ELNRVLGGGVVQGSLVLIGGDPGIGKSTLMLQVSAELHQSAGPVLYVSGEESMHQIKLRADRLGFEGADFYVYAETDMAA
IQDAIYDLQPRFVVIDSIQTMTHEDATSTAGSVGQVRQTTAELMKLAKSQNIGIFIVGHVTKEGNIAGPRILEHMVDTVL
YFEGEKHDTFRILRAVKNRFGSTNEIGVFDMQQDGLHEVANPSELFLEERLAGTNGSAVVASMEGTRPILTEIQALLTPT
SFGNARRTASGLDYSRVSLIMAVLEKRAGLMLQNQDAYLKSTGGVRLDEPAIDLAIAVAVASSYREKETKPTDCFVGEIG
LTGEIRRVTRIAERVQEAEKLGFERIFIPKNALSGLTGKQKIQVVGVTTVREVLNTIFPK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=169061 AWM76_RS00940 WP_003140797.1 199037..200419(+) (radA) [Aerococcus viridans strain CCUG4311]
ATGGCGAAAAAAACGACAACGAGATATGTGTGTCAGGCTTGTGGTTATGAGAGTGTTCAGTTCTATGGCAAGTGCCCGAA
TTGTGGGGCATGGAACCAAATGGAAGAGGAACGCTTATATGGAAAGACTATTGCGCATCCTGAAACGCACGCTGGACAAG
CCAATTCAAGTCGAATGAAGCCACAAAAATTGGCGGCGGTTCAAGGGGAAGAAACCCCGCGTATCCAAACTCAATTAGGC
GAACTAAATCGCGTCTTAGGTGGCGGTGTCGTGCAAGGTTCGTTGGTTTTAATTGGCGGTGACCCAGGGATTGGGAAGTC
AACCTTGATGCTACAGGTATCAGCTGAATTGCACCAGAGTGCTGGGCCAGTTTTATATGTGTCCGGAGAGGAATCGATGC
ATCAAATCAAGCTGCGGGCGGACCGTCTAGGCTTTGAAGGGGCGGATTTCTATGTTTATGCAGAAACGGATATGGCGGCT
ATCCAAGATGCCATTTATGACTTACAACCACGCTTTGTAGTGATCGACTCTATTCAAACTATGACCCACGAGGATGCGAC
ATCAACGGCTGGATCAGTTGGCCAAGTCCGCCAAACGACAGCAGAGTTAATGAAATTAGCCAAGTCACAAAACATCGGTA
TCTTTATCGTTGGGCATGTGACGAAAGAAGGGAACATTGCTGGACCGCGTATTCTAGAGCATATGGTGGATACTGTGCTG
TATTTTGAAGGTGAGAAGCATGATACTTTCAGGATTTTACGGGCAGTGAAGAACCGATTTGGATCGACCAATGAAATTGG
GGTATTTGACATGCAACAAGATGGCTTACATGAAGTGGCTAACCCGTCTGAGCTTTTCTTAGAAGAAAGGCTAGCTGGCA
CTAATGGATCAGCGGTTGTTGCTTCTATGGAAGGAACACGACCGATTCTAACGGAAATTCAAGCGCTACTTACACCTACC
TCATTTGGGAATGCCCGTAGAACAGCTTCTGGCCTAGATTATTCACGGGTATCACTCATTATGGCTGTACTTGAGAAGAG
AGCTGGTTTAATGCTTCAAAATCAAGATGCCTACCTCAAATCAACCGGTGGTGTTCGTTTAGATGAACCAGCGATTGACC
TAGCTATCGCAGTAGCTGTGGCTTCTTCATACCGAGAAAAAGAAACAAAACCAACTGATTGTTTCGTCGGAGAAATTGGT
TTGACTGGTGAAATTAGACGGGTCACAAGAATTGCGGAACGTGTACAAGAAGCTGAAAAATTAGGTTTTGAGCGGATTTT
TATCCCTAAAAATGCCTTATCAGGTTTAACTGGCAAACAAAAAATACAAGTAGTTGGTGTAACTACTGTAAGAGAAGTCT
TGAATACGATTTTTCCTAAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(370-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

64.192

99.565

0.639
  radA Streptococcus mitis NCTC 12261

64.192

99.565

0.639
  radA Streptococcus pneumoniae Rx1

64.192

99.565

0.639
  radA Streptococcus mitis SK321

64.192

99.565

0.639
  radA Streptococcus pneumoniae R6

64.192

99.565

0.639
  radA Streptococcus pneumoniae TIGR4

64.192

99.565

0.639
  radA Bacillus subtilis subsp. subtilis str. 168

63.797

98.478

0.628

Multiple sequence alignment