Detailed information NTG0169031

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BIZ52_RS06130
• Genome accession: NZ_CP017457
• Coordinates: 1359598..1360623 (+)
• Length: 341 a.a.
• NCBI ID: WP_027226811.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. fraseri strain Detroit-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1354598..1365623

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BIZ52_RS06100 (BIZ52_06025)	-	1355029..1355346 (+)	318	WP_027226805.1	DUF2845 domain-containing protein	-
BIZ52_RS06105 (BIZ52_06030)	-	1355382..1355753 (+)	372	WP_027226806.1	protease inhibitor I42 family protein	-
BIZ52_RS06110 (BIZ52_06035)	-	1355808..1357526 (-)	1719	WP_027226807.1	NAD-dependent malic enzyme	-
BIZ52_RS06115 (BIZ52_06040)	-	1357606..1357989 (+)	384	WP_027226808.1	hypothetical protein	-
BIZ52_RS06120 (BIZ52_06045)	surE	1357992..1358750 (+)	759	WP_027226809.1	5'/3'-nucleotidase SurE	-
BIZ52_RS06125 (BIZ52_06050)	-	1358772..1359512 (+)	741	WP_032830130.1	peptidoglycan DD-metalloendopeptidase family protein	-
BIZ52_RS06130 (BIZ52_06055)	rpoS	1359598..1360623 (+)	1026	WP_027226811.1	RNA polymerase sigma factor RpoS	Regulator
BIZ52_RS06135 (BIZ52_06060)	hmgA	1360766..1362016 (-)	1251	WP_027226812.1	homogentisate 1,2-dioxygenase	-
BIZ52_RS06140 (BIZ52_06065)	-	1362162..1362905 (+)	744	WP_027226813.1	YebC/PmpR family DNA-binding transcriptional regulator	-
BIZ52_RS06145 (BIZ52_06070)	ruvC	1362905..1363429 (+)	525	WP_027226814.1	crossover junction endodeoxyribonuclease RuvC	-
BIZ52_RS06150 (BIZ52_06075)	ruvA	1363426..1364025 (+)	600	WP_027226815.1	Holliday junction branch migration protein RuvA	Machinery gene
BIZ52_RS06155 (BIZ52_06080)	-	1364084..1364404 (+)	321	WP_027226816.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39479.78 Da
• Isoelectric Point: 4.3759

>NTDB_id=169031 BIZ52_RS06130 WP_027226811.1 1359598..1360623(+) (rpoS) [Legionella pneumophila subsp. fraseri strain Detroit-1]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEELDEFPEFIDEEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=169031 BIZ52_RS06130 WP_027226811.1 1359598..1360623(+) (rpoS) [Legionella pneumophila subsp. fraseri strain Detroit-1]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAAGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGATTCTTTGCT
GTCAGAAGAAGATGTTGAACCAGATATCGAAAAAATGGAAGAAGAGCTTGATGAGTTTCCAGAGTTTATTGATGAGGAAG
CTTTTCCTTCATTCCAACGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACCTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACAGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTGAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAACTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTTGATCTAATCG
AAGAGGGAAATCTGGGTTTAATGAAATCTGTTGAGAAATTTGATCCCAAGCGAGGGTTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACCATAGAACGTGCCATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTGGTGAAAGA
ACTCAATGTTTATCTTAGAGCAGCAAGACAATTAACGCAAAAACTGGATCATGAACCATCTCCTGAAGAAATAGCAGAAA
TGGTTGATAAGCCTTTGGAGGATGTTCAAAAACTATTGGGCTTGAATGATAAAGTCGCTTCAGTTGATACCCCAATTGGA
TTTGATGAAACCAAATCTTTATTGGATACGATTGCTGATGAAAACAGTTTAAATCCTGCAGAACTATTAACCAATGAGAA
TTTAAGGCAACATATAGAATCTCTTTTGGATAAATTAACTGAGAATCAACAACAGGTTATCGCAAGACGCTTTGGGTTAA
GAGGTTTTGAAAAAGCAACACTTGAGGATGTTGGTAAGGAAATTGATTTGACTCGTGAACGCGTTCGCCAGATTCAGGTT
GAAGCTTTGAAGACGCTAAGAACCTTGTTGGAGCGGGTTGGATTAACGCAAGAGGATTTGTTTTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548