Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AWM74_RS07125 Genome accession   NZ_CP014162
Coordinates   1545874..1547670 (+) Length   598 a.a.
NCBI ID   WP_026465423.1    Uniprot ID   -
Organism   Aerococcus urinaeequi strain CCUG28094     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540874..1552670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWM74_RS07105 (AWM74_07105) - 1541918..1542619 (-) 702 WP_016897705.1 adaptor protein MecA -
  AWM74_RS07110 (AWM74_07110) spxA 1542749..1543165 (-) 417 WP_016897704.1 transcriptional regulator SpxA -
  AWM74_RS07115 (AWM74_07115) trpS 1543380..1544375 (+) 996 WP_026465425.1 tryptophan--tRNA ligase -
  AWM74_RS07120 (AWM74_07120) - 1544709..1545806 (+) 1098 WP_026465424.1 competence protein CoiA -
  AWM74_RS07125 (AWM74_07125) pepF 1545874..1547670 (+) 1797 WP_026465423.1 oligoendopeptidase F Regulator
  AWM74_RS07130 (AWM74_07130) - 1547792..1548487 (-) 696 WP_026465422.1 DsbA family protein -
  AWM74_RS07135 (AWM74_07135) - 1548707..1549297 (-) 591 WP_026465421.1 CYTH domain-containing protein -
  AWM74_RS07140 (AWM74_07140) - 1549506..1550195 (+) 690 WP_034257962.1 GTP pyrophosphokinase -
  AWM74_RS07145 (AWM74_07145) - 1550288..1551127 (+) 840 WP_016897697.1 NAD kinase -
  AWM74_RS07150 (AWM74_07150) - 1551211..1552092 (+) 882 WP_026465420.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67765.47 Da        Isoelectric Point: 4.5308

>NTDB_id=169027 AWM74_RS07125 WP_026465423.1 1545874..1547670(+) (pepF) [Aerococcus urinaeequi strain CCUG28094]
MAKIFEVKPRNEVDSAFQWDLTSIFPDDRAFENALSGFPKKADAFQDYKGTLDQGADQVVTVLEALLAVSRELESLYVYA
HLKHDQDTGDNKYLTYNSQAGALLAQVSEKISWFEPEVLAVSEDVQKTLEDHSEYGHFFRELFAKKAHVLSPSEEALLAG
ASEIFGVSSTTFSLLNNADLKFGKVKDEEGNDVTLSHGSYGVLLESADRSVRENAFKQLYATYEGVKNTNASLMSGNIKG
HNYTAKIRHYDSARQKALDNNNIPESVYDTLVDTVRKNTNLLHEYVALRKDMLGLDDLQMWDMYTPLTGDAPVKFTYEEA
KEITFKALAPLGDQYLKDLAKAFDEKWIDVYENEGKRSGAYSSGAYDTNPYILLNWQDSLNDLYTLVHELGHSMHSYYTR
SNQPYVYGDYSIFVAEIASTTNENLLTSYLLDTIEDKDAQIYILNHYLDGVKGTIFRQTQFAEFEKFMHESDANGQPLTA
DFLSENYFELNKAYYGPSIGEDKTIALEWSRIPHFYMNYYVYQYATGFSAANTLAKRLVEGEEGAVDKYLTYLKSGSSDF
PINVMQKAGIDMTNATYIEETFAQFEQRLAELKGLLNK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=169027 AWM74_RS07125 WP_026465423.1 1545874..1547670(+) (pepF) [Aerococcus urinaeequi strain CCUG28094]
ATGGCAAAAATTTTTGAAGTAAAACCTAGAAATGAAGTAGACAGTGCGTTTCAATGGGACTTAACTAGTATCTTCCCAGA
TGATCGAGCTTTTGAGAATGCCTTAAGTGGATTCCCAAAGAAAGCGGATGCTTTTCAAGACTATAAAGGCACTCTAGATC
AAGGTGCTGACCAAGTGGTAACCGTATTAGAGGCCTTATTAGCGGTGAGCCGTGAATTGGAATCCCTATACGTTTATGCA
CATTTAAAACATGACCAAGACACAGGAGACAACAAGTACCTAACTTACAACAGTCAAGCGGGTGCCTTACTTGCTCAAGT
TAGTGAAAAGATCTCTTGGTTTGAGCCAGAAGTATTAGCAGTATCTGAAGATGTACAAAAAACTTTGGAAGACCACTCTG
AATATGGTCACTTCTTCCGTGAGTTATTTGCGAAGAAGGCGCATGTCTTATCACCAAGTGAAGAGGCTTTACTTGCTGGT
GCTAGCGAAATCTTTGGTGTCTCTTCAACAACTTTCTCACTTTTAAACAATGCTGACTTAAAATTCGGTAAAGTCAAAGA
TGAAGAGGGCAATGATGTTACCCTTTCTCACGGTTCATACGGTGTCCTACTAGAAAGTGCAGACCGTTCTGTTCGAGAAA
ATGCCTTTAAACAACTTTATGCAACTTATGAAGGGGTTAAAAATACCAACGCTTCATTGATGTCAGGTAATATTAAAGGA
CATAATTATACGGCTAAAATTCGTCACTACGATTCAGCACGTCAAAAAGCTTTAGACAACAACAATATTCCAGAAAGTGT
TTATGACACATTAGTCGATACAGTAAGAAAGAATACAAATCTATTACATGAATATGTTGCCTTAAGAAAAGACATGCTAG
GTCTTGATGACTTACAAATGTGGGATATGTATACACCATTAACAGGTGATGCACCGGTGAAATTTACTTACGAAGAAGCT
AAAGAGATTACATTTAAGGCTTTAGCGCCTTTAGGTGACCAATACTTGAAAGACTTGGCCAAAGCCTTTGACGAGAAATG
GATCGATGTTTATGAAAATGAAGGTAAGCGTTCAGGAGCATACTCATCAGGTGCATATGATACCAACCCATATATCTTAC
TAAACTGGCAAGATTCATTGAATGACTTGTATACATTAGTTCATGAGTTAGGTCACTCAATGCACTCTTATTACACTAGA
AGTAACCAACCATACGTATATGGGGACTACTCAATTTTCGTAGCAGAAATTGCCTCTACGACAAACGAAAACTTATTAAC
TTCATATTTACTAGATACAATTGAAGATAAGGATGCACAAATCTATATCTTGAACCACTATCTTGATGGGGTAAAAGGGA
CAATCTTCCGTCAAACACAGTTTGCTGAATTTGAAAAATTCATGCATGAATCAGATGCAAACGGACAACCTTTAACAGCA
GACTTCTTAAGTGAAAACTACTTCGAATTAAACAAGGCCTACTACGGTCCGTCAATCGGAGAGGATAAAACAATCGCTTT
AGAATGGTCTCGTATCCCTCACTTCTACATGAACTACTATGTTTACCAATATGCAACAGGATTCTCTGCAGCCAACACAT
TGGCTAAACGTTTAGTAGAAGGTGAAGAGGGTGCCGTTGACAAGTACTTAACTTACCTGAAATCAGGTTCATCTGATTTC
CCAATTAATGTTATGCAAAAAGCGGGTATCGATATGACCAATGCCACTTATATCGAAGAAACCTTTGCCCAATTCGAGCA
AAGATTAGCTGAATTAAAAGGCCTATTAAACAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(123-182)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.168

99.666

0.5

Multiple sequence alignment