Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AWM74_RS04925 Genome accession   NZ_CP014162
Coordinates   1095345..1096727 (+) Length   460 a.a.
NCBI ID   WP_026465600.1    Uniprot ID   A0A7M1KTN5
Organism   Aerococcus urinaeequi strain CCUG28094     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1090345..1101727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWM74_RS04905 (AWM74_04905) - 1091756..1091947 (-) 192 WP_026465597.1 hypothetical protein -
  AWM74_RS04910 (AWM74_04910) - 1091962..1092633 (-) 672 WP_026465598.1 hypothetical protein -
  AWM74_RS04915 (AWM74_04915) - 1093060..1094655 (+) 1596 WP_236702860.1 alpha-amylase -
  AWM74_RS04920 (AWM74_04920) - 1094758..1095297 (+) 540 WP_026465599.1 hypothetical protein -
  AWM74_RS04925 (AWM74_04925) radA 1095345..1096727 (+) 1383 WP_026465600.1 DNA repair protein RadA Machinery gene
  AWM74_RS04930 (AWM74_04930) - 1096944..1098137 (+) 1194 WP_026465601.1 PIN/TRAM domain-containing protein -
  AWM74_RS04935 (AWM74_04935) gltX 1098224..1099699 (+) 1476 WP_026465602.1 glutamate--tRNA ligase -
  AWM74_RS04940 (AWM74_04940) - 1100080..1100319 (+) 240 WP_034258021.1 glutaredoxin domain-containing protein -
  AWM74_RS04945 (AWM74_04945) nrdI 1100307..1100711 (+) 405 WP_016896485.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50260.45 Da        Isoelectric Point: 6.6987

>NTDB_id=169022 AWM74_RS04925 WP_026465600.1 1095345..1096727(+) (radA) [Aerococcus urinaeequi strain CCUG28094]
MAKKTTTRYVCQACGYESVQFYGKCPNCGAWNQMEEERLYGKTIAHPETRVGQANSSRMKPQKLAAVKGEETPRIQTQLG
ELNRVLGGGVVQGSLVLIGGDPGIGKSTLMLQVSAELHQSAGPVLYVSGEESMHQIKLRADRLGFEGADFYVYAETDMAA
IQDAIYDLQPRFVVIDSIQTMTHEDATSTAGSVGQVRQTTAELMKLAKSQNIGIFIVGHVTKEGNIAGPRILEHMVDTVL
YFEGEKHDTFRILRAVKNRFGSTNEIGVFDMQQDGLHEVANPSELFLEERLAGTNGSAVVASMEGTRPILTEIQALLTPT
SFGNARRTASGLDYSRVSLIMAVLEKRAGLMLQNQDAYLKSTGGVRLDEPAIDLAIAVAVASSYREKETKPTDCFIGEIG
LTGEIRRVTRIAERVQEAEKLGFERIFIPKNAISGLTGKQKIQVVGVTTVREVLNTIFPK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=169022 AWM74_RS04925 WP_026465600.1 1095345..1096727(+) (radA) [Aerococcus urinaeequi strain CCUG28094]
ATGGCGAAGAAAACGACAACGAGATATGTGTGTCAGGCTTGTGGTTATGAGAGTGTTCAGTTCTATGGCAAGTGTCCAAA
TTGTGGGGCTTGGAACCAAATGGAAGAGGAACGCTTATATGGGAAGACTATTGCTCATCCTGAAACCCGCGTTGGACAAG
CCAATTCAAGCCGGATGAAGCCACAAAAATTAGCGGCGGTTAAAGGGGAAGAAACCCCGCGTATCCAAACCCAATTAGGC
GAATTAAATCGCGTCTTAGGTGGCGGAGTGGTGCAAGGTTCGCTGGTTTTAATTGGTGGTGACCCAGGGATTGGGAAGTC
AACCTTAATGCTACAGGTATCAGCTGAATTGCATCAGAGTGCTGGGCCAGTTTTATATGTGTCCGGAGAGGAATCGATGC
ATCAAATCAAGCTACGAGCAGACCGACTAGGATTTGAAGGTGCAGATTTCTATGTTTATGCAGAAACTGATATGGCGGCT
ATTCAAGATGCCATTTATGACTTACAACCGCGCTTTGTAGTGATTGACTCTATTCAAACTATGACCCACGAGGATGCGAC
ATCAACGGCTGGATCAGTTGGCCAAGTCCGCCAAACGACAGCAGAGTTAATGAAATTAGCGAAGTCACAAAATATCGGTA
TTTTTATCGTTGGCCATGTGACGAAAGAAGGAAACATTGCTGGACCGCGTATTCTAGAACACATGGTGGATACTGTACTG
TATTTTGAAGGTGAGAAGCATGATACTTTCAGGATTTTACGGGCAGTGAAGAACCGGTTTGGGTCAACCAATGAAATAGG
TGTCTTTGACATGCAACAAGACGGCCTGCATGAAGTCGCTAACCCTTCCGAACTCTTCTTAGAAGAAAGACTAGCTGGCA
CTAATGGATCAGCAGTTGTTGCTTCGATGGAAGGAACACGACCGATTTTAACGGAAATTCAAGCGCTACTTACACCTACC
TCATTTGGGAATGCCCGTAGAACAGCTTCTGGCTTAGATTATTCACGGGTATCACTAATTATGGCTGTACTTGAGAAGAG
AGCCGGTTTAATGCTTCAAAATCAAGATGCCTACCTCAAATCAACTGGTGGCGTCCGTTTAGATGAACCAGCGATTGACC
TGGCTATCGCTGTAGCTGTGGCTTCTTCATACCGAGAAAAAGAAACCAAACCAACTGATTGTTTCATTGGAGAAATTGGT
TTGACTGGTGAAATTAGACGGGTAACAAGAATTGCGGAACGTGTTCAAGAAGCTGAAAAACTAGGTTTTGAGCGTATTTT
TATCCCAAAAAATGCGATATCAGGTTTAACTGGCAAACAAAAAATACAAGTAGTTGGTGTAACTACTGTAAGAGAAGTGT
TAAATACGATTTTTCCAAAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(72-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1KTN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

63.974

99.565

0.637
  radA Streptococcus mitis NCTC 12261

63.974

99.565

0.637
  radA Streptococcus mitis SK321

63.974

99.565

0.637
  radA Streptococcus pneumoniae TIGR4

63.974

99.565

0.637
  radA Streptococcus pneumoniae D39

63.974

99.565

0.637
  radA Streptococcus pneumoniae R6

63.974

99.565

0.637
  radA Bacillus subtilis subsp. subtilis str. 168

63.797

98.478

0.628

Multiple sequence alignment