Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AWM73_RS00195 Genome accession   NZ_CP014161
Coordinates   35877..37265 (+) Length   462 a.a.
NCBI ID   WP_060777521.1    Uniprot ID   A0A0X8FD21
Organism   Aerococcus urinae strain CCUG 36881     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 30877..42265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWM73_RS00175 (AWM73_00175) pgeF 30880..31653 (-) 774 WP_060777518.1 peptidoglycan editing factor PgeF -
  AWM73_RS00180 (AWM73_00180) - 31830..34757 (+) 2928 WP_060777519.1 insulinase family protein -
  AWM73_RS00185 (AWM73_00185) - 34984..35169 (-) 186 WP_060777520.1 hypothetical protein -
  AWM73_RS00190 (AWM73_00190) - 35338..35847 (+) 510 WP_060779033.1 dUTP diphosphatase -
  AWM73_RS00195 (AWM73_00195) radA 35877..37265 (+) 1389 WP_060777521.1 DNA repair protein RadA Machinery gene
  AWM73_RS00200 (AWM73_00200) - 37352..38524 (+) 1173 WP_060777522.1 PIN/TRAM domain-containing protein -
  AWM73_RS00205 (AWM73_00205) - 38635..39450 (-) 816 WP_060777523.1 Cof-type HAD-IIB family hydrolase -
  AWM73_RS00210 (AWM73_00210) - 39618..40319 (+) 702 WP_060777524.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50410.62 Da        Isoelectric Point: 6.5105

>NTDB_id=168990 AWM73_RS00195 WP_060777521.1 35877..37265(+) (radA) [Aerococcus urinae strain CCUG 36881]
MAKKKRKTVYTCQACGYESPQWYGKCPQCGAWNTLEEEVIAGKPIRQAGTEVNQKKAKPERLKEVSQAEEKRVKTGLGEF
NRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVAKQLSDNGSRGLYVSGEESLHQIKMRADRLGYHDADFFVYAETDLLAIE
AAISDTQADFVVIDSIQTMVHPNNESLAGSVSQVREATGELMHIAKSSGIAIFVVGHVTKEGNIAGPRILEHMVDTVLYL
EGEKHNTFRILRAVKNRFGSTNEIGVFDMKSQGLEEVTNPSQLFLEERLMGANGSAVVASMEGTRPILTEIQALLSATAF
GNARRTASGLDYSRVTLIMAVLEKRAHLMLQNQDAYLKSTGGVKLDEPAIDLAIAVAVASSYWEKETQASDCFVGEIGLT
GEIRRISRINERIQEAEKLGFKRIFIPYGNLQGLAIDSQDIEIIGAKTLTQVLKEVFPPQGR

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=168990 AWM73_RS00195 WP_060777521.1 35877..37265(+) (radA) [Aerococcus urinae strain CCUG 36881]
ATGGCTAAAAAGAAGCGAAAAACCGTCTATACTTGCCAGGCCTGTGGTTATGAATCGCCCCAGTGGTATGGGAAATGTCC
CCAGTGTGGAGCGTGGAATACCCTGGAAGAGGAAGTGATTGCGGGTAAGCCCATCCGCCAAGCTGGGACAGAGGTCAATC
AGAAAAAAGCCAAGCCTGAACGCCTCAAGGAAGTCAGCCAGGCGGAAGAAAAACGGGTAAAGACTGGCCTAGGCGAATTT
AACCGAGTCCTCGGTGGCGGGGTAGTCCCTGGCTCCTTGGTCCTGATTGGTGGTGATCCTGGTATTGGGAAGTCGACCCT
GCTCCTCCAGGTGGCTAAGCAATTAAGTGATAATGGTAGTCGGGGCCTCTATGTTTCTGGGGAAGAAAGTTTGCATCAAA
TCAAGATGCGGGCTGACCGCTTAGGCTACCACGATGCGGATTTCTTTGTTTATGCCGAAACCGACCTCTTAGCCATTGAA
GCGGCTATTTCTGATACCCAGGCGGATTTTGTGGTGATTGACTCCATCCAAACCATGGTCCATCCCAATAATGAATCTTT
AGCCGGTAGTGTCAGCCAGGTCAGAGAAGCGACCGGAGAACTCATGCATATCGCCAAAAGTTCTGGAATCGCCATCTTTG
TAGTCGGCCATGTGACCAAGGAAGGTAATATTGCCGGACCGCGGATTCTCGAACATATGGTGGACACGGTTTTATACTTG
GAAGGGGAGAAGCACAACACTTTCCGGATCCTAAGAGCGGTCAAAAACCGTTTTGGGTCGACCAATGAAATCGGCGTTTT
TGACATGAAAAGTCAGGGCCTAGAAGAGGTCACCAACCCTAGCCAGCTCTTTTTAGAAGAACGGCTCATGGGAGCCAATG
GGTCGGCAGTGGTTGCATCGATGGAAGGCACCCGGCCCATCCTAACCGAAATCCAAGCCCTCTTGTCGGCCACGGCCTTT
GGTAATGCCCGTCGTACGGCCAGTGGTTTGGACTATTCCCGGGTGACCCTCATTATGGCGGTCTTAGAGAAGCGGGCCCA
TCTCATGCTGCAGAACCAAGATGCCTACCTCAAGTCAACCGGTGGGGTTAAACTGGATGAACCAGCTATTGATCTGGCTA
TTGCTGTGGCGGTGGCTTCCAGTTACTGGGAGAAGGAGACCCAGGCCAGCGATTGCTTTGTGGGGGAGATTGGCTTGACA
GGTGAAATTCGTCGGATTTCCCGGATTAATGAACGGATCCAAGAGGCGGAAAAATTAGGCTTTAAACGAATTTTTATCCC
TTATGGTAACCTGCAAGGGCTAGCGATTGATAGTCAAGACATTGAAATTATTGGTGCCAAGACCCTGACCCAAGTTCTTA
AAGAAGTCTTTCCCCCTCAAGGGAGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(367-430)

AAA domain (AAA_25)

(68-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8FD21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

62.914

98.052

0.617
  radA Streptococcus pneumoniae D39

62.914

98.052

0.617
  radA Streptococcus pneumoniae R6

62.914

98.052

0.617
  radA Streptococcus pneumoniae Rx1

62.914

98.052

0.617
  radA Streptococcus mitis SK321

62.914

98.052

0.617
  radA Bacillus subtilis subsp. subtilis str. 168

62.281

98.701

0.615
  radA Streptococcus mitis NCTC 12261

62.693

98.052

0.615

Multiple sequence alignment