Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CJJRM3420_RS05825 Genome accession   NZ_CP017456
Coordinates   1130636..1131130 (+) Length   164 a.a.
NCBI ID   WP_002855991.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni str. RM3420     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1125636..1136130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJJRM3420_RS05810 (CjjRM3420_1146) - 1127022..1128200 (-) 1179 WP_002856548.1 metal-dependent hydrolase -
  CJJRM3420_RS05815 (CjjRM3420_1147) gpsA 1128210..1129106 (-) 897 WP_079254192.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  CJJRM3420_RS05820 (CjjRM3420_1148) gatB 1129103..1130521 (-) 1419 WP_002856133.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  CJJRM3420_RS05825 (CjjRM3420_1149) luxS 1130636..1131130 (+) 495 WP_002855991.1 S-ribosylhomocysteine lyase Regulator
  CJJRM3420_RS05830 (CjjRM3420_1150) - 1131442..1132434 (+) 993 WP_002856389.1 isopenicillin N synthase family dioxygenase -
  CJJRM3420_RS05835 (CjjRM3420_1151) - 1132444..1133214 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  CJJRM3420_RS05840 (CjjRM3420_1152) metE 1133226..1135490 (+) 2265 WP_002856057.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18258.18 Da        Isoelectric Point: 5.9947

>NTDB_id=168987 CJJRM3420_RS05825 WP_002855991.1 1130636..1131130(+) (luxS) [Campylobacter jejuni subsp. jejuni str. RM3420]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCVPNKDIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=168987 CJJRM3420_RS05825 WP_002855991.1 1130636..1131130(+) (luxS) [Campylobacter jejuni subsp. jejuni str. RM3420]
ATGCCATTATTAGATAGTTTTAAAGTTGATCATACCAAAATGCCAGCGCCCGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCGTACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAGATTCGGTTGAAATCATTGATATTTCACCT
ATGGGCTGTCGTACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment