Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AWM72_RS07305 Genome accession   NZ_CP014160
Coordinates   1632944..1634740 (+) Length   598 a.a.
NCBI ID   WP_067975549.1    Uniprot ID   -
Organism   Aerococcus sanguinicola strain CCUG43001     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1627944..1639740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWM72_RS07285 (AWM72_07285) - 1628934..1629581 (-) 648 WP_067975537.1 adaptor protein MecA -
  AWM72_RS07290 (AWM72_07290) spxA 1629852..1630247 (-) 396 WP_067975540.1 transcriptional regulator SpxA -
  AWM72_RS07295 (AWM72_07295) trpS 1630697..1631689 (+) 993 WP_067975545.1 tryptophan--tRNA ligase -
  AWM72_RS07300 (AWM72_07300) - 1631898..1632917 (+) 1020 WP_067975547.1 competence protein CoiA -
  AWM72_RS07305 (AWM72_07305) pepF 1632944..1634740 (+) 1797 WP_067975549.1 oligoendopeptidase F Regulator
  AWM72_RS07310 (AWM72_07310) - 1634802..1635539 (-) 738 WP_067975551.1 DsbA family protein -
  AWM72_RS07315 (AWM72_07315) - 1635573..1636163 (-) 591 WP_067975555.1 CYTH domain-containing protein -
  AWM72_RS07320 (AWM72_07320) - 1636521..1637315 (+) 795 WP_067975559.1 NAD kinase -
  AWM72_RS07325 (AWM72_07325) - 1637350..1638273 (+) 924 WP_067975562.1 RluA family pseudouridine synthase -
  AWM72_RS07330 (AWM72_07330) mgtE 1638305..1639675 (+) 1371 WP_180754557.1 magnesium transporter -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68751.43 Da        Isoelectric Point: 4.6586

>NTDB_id=168984 AWM72_RS07305 WP_067975549.1 1632944..1634740(+) (pepF) [Aerococcus sanguinicola strain CCUG43001]
MSEIKEAQAREAMDPAYQWDLSSIYAQDEDFEKDLANFSQHLDRLAPYQRQLHEGEDQVISALEVLLEISRQLERLYVYA
HLKHDQDTTNAKYLDYNNKASGLLTEVSSALSWFEPEVLALPDDSLDRLAEREDYGQFFKELRDQKAHVLDPDLEKALAA
AGEIFSSPGRIFSMINNADLTFDPVEAADGQKISLTHGSYGRLLEHSDRNLRRQAFHNLYQGYEGLIHTLAENMSNNVKS
HNYKAKLRHYDSAREAALAQNHIPVAVYERLVEKVNDHLGDFHDYLNFRKDQLGLKKMQMYDLYTPLAGEAPIRFTFEEA
KDLTRKALAPLGQAYLADLEQAFEEGWIDVYENIGKRSGAYSSGAYDTKPYVLLNWQDSLNDVYTLVHELGHSMHSYYTR
KHQPYVYGDYSIFLAEIASTTNENLLTEYLLATVEDTETRIYILNQYLDSVKGTLFRQTQFAEFEQWMHEEAAAGRSLTA
ETLNQAYFELNQRYYGSAVDPEDKTIAMEWARIPHFYYNFYVYQYATGFSAANRLAERISRGEEGAVSAYLSYLSAGSSD
YPIQVMQRAGVDMTQGDYLDSAFDQFKTRLQELKQLMA

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=168984 AWM72_RS07305 WP_067975549.1 1632944..1634740(+) (pepF) [Aerococcus sanguinicola strain CCUG43001]
ATGTCAGAAATTAAAGAAGCCCAAGCTAGAGAGGCTATGGATCCTGCCTACCAGTGGGATCTGAGCTCGATTTATGCCCA
AGATGAAGACTTTGAAAAAGATTTAGCTAACTTTAGCCAACATTTAGATCGTCTAGCCCCTTACCAGAGGCAGCTCCATG
AGGGGGAGGACCAGGTGATTAGCGCCCTCGAGGTTCTTTTAGAGATTAGCCGGCAACTGGAACGGCTCTATGTCTATGCC
CATCTCAAGCACGACCAGGATACGACCAACGCCAAGTATTTGGACTATAACAACAAAGCCAGTGGTCTCTTGACTGAGGT
CTCGAGTGCTCTGTCTTGGTTTGAGCCTGAAGTCTTGGCCTTGCCCGATGACAGTTTGGACCGCCTCGCTGAGCGTGAGG
ACTACGGGCAATTCTTTAAGGAATTGAGAGACCAGAAGGCCCATGTCCTGGACCCTGATTTGGAAAAAGCCTTAGCAGCA
GCGGGGGAAATCTTCTCTAGCCCAGGACGAATCTTTAGCATGATTAATAACGCTGATTTAACTTTTGATCCGGTTGAAGC
GGCGGATGGTCAGAAAATTTCCTTAACCCATGGGAGTTATGGCCGCTTATTAGAACACTCGGACCGCAACTTGCGCCGCC
AGGCCTTCCACAATCTCTACCAGGGCTATGAAGGCTTGATCCATACCCTGGCCGAGAATATGAGTAATAATGTGAAGAGC
CACAATTACAAGGCTAAGCTCCGCCACTATGACAGTGCACGGGAAGCAGCCCTGGCCCAAAACCATATTCCTGTGGCTGT
CTATGAACGCCTGGTAGAAAAGGTGAATGACCACTTAGGAGACTTCCACGACTACTTAAACTTCCGCAAAGACCAGCTCG
GCTTGAAAAAGATGCAGATGTATGATCTCTATACGCCCCTAGCTGGTGAGGCGCCTATCCGCTTTACTTTTGAAGAGGCT
AAGGACCTTACCCGCAAGGCCCTAGCCCCCCTTGGCCAAGCTTATTTGGCTGATCTGGAACAGGCCTTTGAGGAAGGCTG
GATTGATGTCTATGAGAATATCGGCAAACGGTCAGGGGCTTATTCATCTGGTGCCTATGACACCAAGCCTTATGTCCTCC
TCAACTGGCAAGATTCTTTAAACGATGTCTATACCCTGGTCCATGAACTGGGCCACAGTATGCACTCTTACTACACCCGC
AAGCACCAGCCTTATGTTTATGGAGATTATTCGATCTTCTTGGCTGAGATTGCTTCGACCACGAATGAAAATCTCTTAAC
TGAATATCTCTTAGCGACGGTGGAAGATACAGAGACCCGGATCTATATCCTCAACCAATACCTGGATAGCGTGAAGGGGA
CGCTCTTTAGACAGACCCAGTTCGCAGAATTCGAACAGTGGATGCATGAAGAGGCAGCTGCAGGGCGGAGTTTGACGGCA
GAGACCCTCAACCAGGCCTATTTTGAACTCAACCAGCGCTATTACGGATCGGCTGTTGACCCTGAAGATAAGACGATTGC
TATGGAATGGGCACGGATTCCGCATTTCTATTACAATTTCTATGTCTACCAGTATGCGACGGGCTTTTCTGCTGCTAATC
GTTTGGCTGAACGGATTAGTCGTGGGGAAGAGGGGGCTGTTAGTGCCTACCTAAGCTACTTATCAGCGGGCTCTAGCGAT
TACCCGATTCAGGTGATGCAGCGCGCTGGTGTGGATATGACCCAGGGGGACTACTTGGATTCTGCCTTTGACCAATTCAA
GACCCGCCTCCAAGAACTGAAACAATTAATGGCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(117-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.169

98.997

0.497

Multiple sequence alignment