Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CJJRM3420_RS03095 Genome accession   NZ_CP017456
Coordinates   592906..593289 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni str. RM3420     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 587906..598289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJJRM3420_RS03075 (CjjRM3420_0602) - 587985..589919 (-) 1935 WP_002856931.1 RNB domain-containing ribonuclease -
  CJJRM3420_RS03080 (CjjRM3420_0603) ilvC 590038..591060 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  CJJRM3420_RS03085 (CjjRM3420_0604) - 591064..592146 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  CJJRM3420_RS03090 (CjjRM3420_0605) dprA 592136..592909 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  CJJRM3420_RS03095 (CjjRM3420_0606) dprB 592906..593289 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  CJJRM3420_RS03100 (CjjRM3420_0607) - 593318..594157 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJJRM3420_RS03105 (CjjRM3420_0608) msrA 594333..594830 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJJRM3420_RS03110 (CjjRM3420_0609) ppa 594871..595389 (-) 519 WP_002855031.1 inorganic diphosphatase -
  CJJRM3420_RS03115 (CjjRM3420_0610) adk 595399..595977 (-) 579 WP_002855137.1 adenylate kinase -
  CJJRM3420_RS03120 (CjjRM3420_0611) aspS 595974..597725 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=168973 CJJRM3420_RS03095 WP_002856861.1 592906..593289(+) (dprB) [Campylobacter jejuni subsp. jejuni str. RM3420]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=168973 CJJRM3420_RS03095 WP_002856861.1 592906..593289(+) (dprB) [Campylobacter jejuni subsp. jejuni str. RM3420]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449