Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PcP3B5_RS26685 Genome accession   NZ_CP014158
Coordinates   6093353..6094726 (-) Length   457 a.a.
NCBI ID   WP_058070082.1    Uniprot ID   A0A1A5D892
Organism   Pseudomonas citronellolis strain P3B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6088353..6099726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PcP3B5_RS26665 (PcP3B5_54870) yjiA 6088670..6089650 (-) 981 WP_043268876.1 GTPase -
  PcP3B5_RS26670 (PcP3B5_54880) - 6089726..6089929 (-) 204 WP_009613138.1 YbdD/YjiX family protein -
  PcP3B5_RS26675 (PcP3B5_54890) - 6089945..6092011 (-) 2067 WP_058070081.1 carbon starvation CstA family protein -
  PcP3B5_RS26680 (PcP3B5_54900) - 6092424..6092795 (+) 372 WP_009613140.1 PilZ domain-containing protein -
  PcP3B5_RS26685 (PcP3B5_54910) radA 6093353..6094726 (-) 1374 WP_058070082.1 DNA repair protein RadA Machinery gene
  PcP3B5_RS26690 (PcP3B5_54920) - 6094822..6095064 (-) 243 WP_043268874.1 hypothetical protein -
  PcP3B5_RS26695 (PcP3B5_54930) - 6095142..6095384 (-) 243 WP_009613144.1 YdcH family protein -
  PcP3B5_RS26700 (PcP3B5_54940) mscL 6095575..6095988 (+) 414 WP_043268871.1 large-conductance mechanosensitive channel protein MscL -
  PcP3B5_RS26705 (PcP3B5_54950) - 6096006..6097559 (-) 1554 WP_058070083.1 TerC family protein -
  PcP3B5_RS26710 (PcP3B5_54970) - 6097751..6098527 (-) 777 WP_061562836.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48907.31 Da        Isoelectric Point: 6.8983

>NTDB_id=168939 PcP3B5_RS26685 WP_058070082.1 6093353..6094726(-) (radA) [Pseudomonas citronellolis strain P3B5]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVLDTTPTGGSGSSGRGGWAGQQANIKTLAEVSVEEMPRFSTASN
ELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIANRMPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESI
IATARHEQPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLY
FEGESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQESVPGSVVMATWEGSRPMLVEVQALVDTSH
LANPRRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLDHQLLVFGEVGL
SGEVRPVPSGQERLKEAAKHGFKRAIVPQGNAPKEAPPGLQVIPVTRLEQALDALFE

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=168939 PcP3B5_RS26685 WP_058070082.1 6093353..6094726(-) (radA) [Pseudomonas citronellolis strain P3B5]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCCACCTTCCCCAAATGGGCCGGCCAGTGCGCCGACTG
CGGCGCCTGGAACACCCTGGTGGAGACCGTTCTCGACACCACGCCTACCGGCGGCTCCGGCAGTTCCGGACGCGGCGGCT
GGGCCGGGCAGCAGGCCAACATCAAGACCCTGGCGGAAGTCAGCGTCGAGGAGATGCCGCGCTTCAGCACCGCCTCCAAC
GAACTCGACCGCGTCCTCGGCGGCGGCCTGGTGGACGGCTCCGTGGTGCTCATCGGCGGCGACCCCGGCATCGGCAAGTC
GACCATCCTCCTGCAGACTCTGTGCAGCATCGCCAACCGCATGCCCGCGCTCTACGTCACCGGCGAAGAGTCGCAGCAGC
AGGTGGCCATGCGCGCGCGGCGCCTGGGCCTGCCGGAAGACAAGCTCAAGGTCATGACCGAGACCTGCATAGAAAGCATC
ATCGCCACTGCTCGCCACGAGCAGCCCAAGGTGATGGTGATCGACTCCATCCAGACCATCTTCACCGAACAGCTGCAATC
GGCCCCCGGCGGCGTCGCCCAGGTGCGCGAGAGCGCCGCGTTGCTGGTGCGCTTCGCCAAGCAGAGCGGCACGGCGATCT
TCCTGGTCGGCCACGTCACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTGGAGCACATGGTTGACACCGTGCTGTAT
TTCGAGGGCGAGTCCGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGT
GTTCGCCATGACCGACCGTGGCCTGAAGGAGGTCTCCAACCCTTCGGCGATCTTCCTCACCCGCGCCCAGGAATCGGTGC
CCGGCAGCGTGGTCATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTCGACACCAGCCAC
CTGGCCAACCCGCGGCGCGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCACGG
CGGCATCCCCACCTACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTGCTGGAAACCGCGTCGGACCTGG
CGCTGATGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGCTGGATCACCAGCTGCTGGTGTTCGGCGAGGTCGGCCTG
TCCGGCGAGGTGCGCCCGGTGCCCAGCGGCCAGGAACGCCTGAAGGAAGCCGCCAAGCACGGCTTCAAGCGCGCCATCGT
GCCCCAGGGCAACGCCCCGAAGGAGGCCCCGCCGGGACTGCAGGTGATCCCGGTGACGCGCCTGGAGCAGGCGCTGGATG
CGTTGTTCGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-223)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5D892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.458

99.344

0.481
  radA Streptococcus pneumoniae Rx1

45.987

100

0.464
  radA Streptococcus pneumoniae R6

45.987

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.987

100

0.464
  radA Streptococcus pneumoniae D39

45.987

100

0.464
  radA Streptococcus mitis SK321

46.171

100

0.462
  radA Streptococcus mitis NCTC 12261

45.952

100

0.46

Multiple sequence alignment