Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AWV60_RS21995 Genome accession   NZ_CP014156
Coordinates   4632380..4632976 (+) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain HKUOPL4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4627380..4637976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWV60_RS21970 (AWV60_22505) - 4627509..4629266 (-) 1758 WP_053810587.1 AAA family ATPase -
  AWV60_RS21975 (AWV60_22510) matP 4629452..4629904 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AWV60_RS21980 (AWV60_22515) ompA 4630099..4631169 (-) 1071 WP_002898408.1 porin OmpA -
  AWV60_RS21985 (AWV60_22520) sulA 4631522..4632031 (-) 510 WP_053810586.1 SOS-induced cell division inhibitor SulA -
  AWV60_RS21990 - 4632057..4632362 (+) 306 WP_157737552.1 hypothetical protein -
  AWV60_RS21995 (AWV60_22525) sxy/tfoX 4632380..4632976 (+) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  AWV60_RS22000 (AWV60_22530) yccS 4632987..4635122 (-) 2136 WP_004201435.1 YccS family putative transporter -
  AWV60_RS22005 (AWV60_22535) - 4635140..4635586 (-) 447 WP_004201437.1 YccF domain-containing protein -
  AWV60_RS22010 (AWV60_22540) helD 4635711..4637765 (+) 2055 WP_004201438.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=168912 AWV60_RS21995 WP_004201433.1 4632380..4632976(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain HKUOPL4]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=168912 AWV60_RS21995 WP_004201433.1 4632380..4632976(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain HKUOPL4]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment