Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   B2M06_RS05965 Genome accession   NZ_CP014151
Coordinates   1218441..1219394 (+) Length   317 a.a.
NCBI ID   WP_025773893.1    Uniprot ID   -
Organism   Clostridium botulinum strain BrDura     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1213441..1224394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2M06_RS05940 (B2M06_05890) - 1213562..1213798 (+) 237 WP_003356614.1 SHOCT domain-containing protein -
  B2M06_RS05945 (B2M06_05895) - 1214068..1214769 (+) 702 Protein_1128 response regulator transcription factor -
  B2M06_RS05950 (B2M06_05900) - 1214769..1216175 (+) 1407 WP_085321435.1 sensor histidine kinase -
  B2M06_RS05955 (B2M06_05905) - 1216515..1217201 (-) 687 WP_085321436.1 DNA alkylation repair protein -
  B2M06_RS05960 (B2M06_05910) - 1217437..1218195 (-) 759 WP_085321437.1 helix-turn-helix domain-containing protein -
  B2M06_RS05965 (B2M06_05915) ceuB 1218441..1219394 (+) 954 WP_025773893.1 ABC transporter permease Machinery gene
  B2M06_RS05970 (B2M06_05920) - 1219384..1220334 (+) 951 WP_003357016.1 iron chelate uptake ABC transporter family permease subunit -
  B2M06_RS05975 (B2M06_05925) - 1220331..1221086 (+) 756 WP_011948720.1 ABC transporter ATP-binding protein -
  B2M06_RS05980 (B2M06_05930) - 1221160..1222104 (+) 945 WP_025773881.1 siderophore ABC transporter substrate-binding protein -
  B2M06_RS05990 (B2M06_05940) - 1222307..1223308 (+) 1002 WP_025773879.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34889.26 Da        Isoelectric Point: 9.9543

>NTDB_id=168822 B2M06_RS05965 WP_025773893.1 1218441..1219394(+) (ceuB) [Clostridium botulinum strain BrDura]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATITEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYDLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=168822 B2M06_RS05965 WP_025773893.1 1218441..1219394(+) (ceuB) [Clostridium botulinum strain BrDura]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTATTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATGATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAACAAATTCACAGTAGCAGGTATGGGAGAGGATTTTTCTAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment