Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RSJ16_RS07200 Genome accession   NZ_CP014150
Coordinates   1418247..1420106 (+) Length   619 a.a.
NCBI ID   WP_330373457.1    Uniprot ID   -
Organism   Paraclostridium sordellii strain AM370     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1413247..1425106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSJ16_RS07175 (RSJ16_07160) - 1414207..1414581 (+) 375 WP_101508516.1 hypothetical protein -
  RSJ16_RS07180 (RSJ16_07165) - 1414647..1415042 (+) 396 WP_101508517.1 hypothetical protein -
  RSJ16_RS07185 (RSJ16_07170) - 1415225..1415413 (+) 189 WP_101508518.1 ferredoxin -
  RSJ16_RS07190 (RSJ16_07175) - 1415454..1415897 (-) 444 WP_021124036.1 MarR family winged helix-turn-helix transcriptional regulator -
  RSJ16_RS07195 (RSJ16_07180) - 1416050..1418254 (+) 2205 WP_101508519.1 ABC transporter ATP-binding protein -
  RSJ16_RS07200 (RSJ16_07185) rcrQ 1418247..1420106 (+) 1860 WP_330373457.1 ABC transporter ATP-binding protein Regulator
  RSJ16_RS07205 (RSJ16_07190) cspD 1420212..1420415 (+) 204 WP_021124043.1 cold-shock protein CspD -
  RSJ16_RS07210 (RSJ16_07195) asnB 1420566..1422467 (+) 1902 WP_199765983.1 asparagine synthase (glutamine-hydrolyzing) -
  RSJ16_RS07215 (RSJ16_07200) - 1422487..1423176 (+) 690 WP_021128302.1 response regulator transcription factor -
  RSJ16_RS07220 (RSJ16_07205) - 1423179..1424633 (+) 1455 WP_055329097.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68453.82 Da        Isoelectric Point: 5.4190

>NTDB_id=168814 RSJ16_RS07200 WP_330373457.1 1418247..1420106(+) (rcrQ) [Paraclostridium sordellii strain AM370]
MANNKKTMPKGPGMGGPKGMQGGEKAKDFKGTMKNLFNYLKPYRLSILIVIIFAIGSSAFSIVGPKVLGNATTEIFEGVV
RKIGGEGNGGIDFNYIGKILGILLGLYVISALFSYVQSFIMSGISQKVSYKLRKEISEKINRMPLSYFDKKTHGEVLSRV
TNDIDTLSQNLNQTMTQVITAVTTVIGVLIMMISISWQMTIVALLILPISGILISVVVKKSQSHFKSQQEYLGHVNGQVE
ETYGGHNIVKAFNGEEAAINEFNELNDKLYESAWKSQFLSGMMMPMMSFIGNIGYVLVSILGGYFTIKKTIEVGDILSFI
QYVRSFNQPIAQTAQVANIMQSMAAAAERAFEFLDEDEEVQTSESPVSVENIEGNVSFDHVNFGYSEDKIIINNFTTNIK
AGQKVAIVGPTGAGKTTIVKLLMRFYDVNKGAILIDGHNIKDFNRSDLRSLFGMVLQDTWLFNGSIMENIRYSKLNASDE
EVIEAAKSAHVDHFVKTLPDGYKMELNEEANNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMENLME
GRTSFIIAHRLSTIKDADLILVMKDGDIVEQGSHEELLEKGGFYSSLYNSQFEECDEVC

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=168814 RSJ16_RS07200 WP_330373457.1 1418247..1420106(+) (rcrQ) [Paraclostridium sordellii strain AM370]
ATGGCTAATAATAAAAAAACTATGCCAAAAGGCCCAGGAATGGGTGGACCTAAAGGCATGCAAGGTGGAGAAAAAGCAAA
AGATTTTAAAGGTACTATGAAAAATCTTTTCAACTATTTAAAACCATATAGATTATCTATATTAATAGTTATTATATTTG
CAATAGGGAGTTCAGCTTTCTCTATTGTAGGACCTAAAGTATTAGGAAATGCTACTACAGAAATTTTTGAGGGAGTAGTA
AGAAAAATTGGTGGAGAAGGTAATGGAGGAATAGATTTTAATTATATAGGTAAGATTCTTGGAATACTTTTAGGCCTTTA
TGTAATTAGTGCATTATTTTCCTATGTTCAGTCGTTTATAATGTCTGGGATATCACAAAAGGTATCATATAAATTAAGAA
AAGAGATCTCAGAAAAAATAAATCGTATGCCACTATCATATTTTGATAAGAAAACTCATGGAGAAGTTTTATCTAGGGTG
ACAAATGATATAGATACATTAAGTCAAAACTTAAATCAAACTATGACTCAAGTTATAACTGCTGTTACTACTGTAATAGG
TGTACTTATAATGATGATATCTATAAGTTGGCAAATGACTATAGTTGCATTATTAATACTTCCTATTTCAGGAATATTAA
TATCTGTAGTTGTAAAAAAATCTCAAAGTCACTTTAAATCTCAACAAGAGTACTTAGGTCATGTAAATGGTCAAGTAGAA
GAGACTTATGGAGGACATAATATAGTAAAGGCTTTTAATGGAGAAGAAGCTGCAATAAATGAATTTAATGAACTCAATGA
TAAATTATATGAATCAGCATGGAAATCTCAATTCTTATCAGGAATGATGATGCCTATGATGAGTTTTATAGGTAATATAG
GATATGTTTTAGTATCTATATTAGGTGGATACTTTACAATTAAAAAGACTATAGAAGTAGGAGATATACTATCTTTCATA
CAATATGTAAGAAGTTTTAACCAACCAATAGCACAAACTGCTCAGGTTGCAAATATAATGCAATCTATGGCAGCTGCAGC
TGAGAGAGCCTTTGAATTTTTAGATGAAGATGAAGAAGTTCAAACAAGTGAAAGCCCAGTAAGCGTTGAAAATATAGAAG
GAAATGTAAGTTTTGACCATGTAAACTTTGGATACAGTGAAGATAAAATAATCATAAATAACTTTACAACTAATATAAAA
GCTGGTCAAAAAGTAGCTATAGTTGGACCAACAGGTGCAGGAAAAACTACAATAGTTAAATTATTAATGCGCTTTTATGA
TGTAAACAAAGGAGCTATATTAATAGATGGGCATAATATAAAAGACTTCAATAGAAGTGACTTACGTAGTCTATTTGGAA
TGGTTCTTCAAGATACATGGTTATTTAATGGAAGTATAATGGAAAATATAAGATATTCAAAGCTTAATGCAAGTGATGAA
GAAGTTATAGAGGCTGCTAAATCAGCACATGTAGATCACTTTGTAAAGACTCTTCCAGATGGATATAAAATGGAATTAAA
TGAAGAGGCTAATAATGTTTCACAAGGACAAAAACAACTTTTAACTATAGCTAGAGCCATTTTAGCAGACCCTAAAATAC
TTATATTAGATGAAGCTACAAGTTCTGTTGATACTCGTACAGAAGTACTTATACAAAAAGCTATGGAAAATCTTATGGAA
GGTAGAACTAGCTTTATAATAGCTCATAGACTTTCAACTATAAAAGATGCTGATTTAATACTTGTTATGAAGGATGGCGA
TATAGTAGAACAAGGTAGTCATGAGGAGCTATTAGAAAAGGGAGGATTCTATTCATCTTTATACAATAGCCAGTTTGAAG
AATGCGATGAGGTTTGTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(47-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.453

94.507

0.486

Multiple sequence alignment