Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RSJ16_RS04205 Genome accession   NZ_CP014150
Coordinates   799549..800502 (+) Length   317 a.a.
NCBI ID   WP_055329584.1    Uniprot ID   A0A9P1P8D8
Organism   Paraclostridium sordellii strain AM370     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 794549..805502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSJ16_RS04185 (RSJ16_04180) - 795227..795964 (+) 738 WP_055329589.1 LytTR family DNA-binding domain-containing protein -
  RSJ16_RS04190 (RSJ16_04185) - 796117..797457 (+) 1341 WP_054631448.1 PTS sugar transporter subunit IIC -
  RSJ16_RS04195 (RSJ16_04190) - 797459..798211 (+) 753 WP_055329587.1 MurR/RpiR family transcriptional regulator -
  RSJ16_RS04200 (RSJ16_04195) - 798214..799401 (+) 1188 WP_101508252.1 MalY/PatB family protein -
  RSJ16_RS04205 (RSJ16_04200) ceuB 799549..800502 (+) 954 WP_055329584.1 ABC transporter permease Machinery gene
  RSJ16_RS04210 (RSJ16_04205) - 800492..801484 (+) 993 WP_101508253.1 iron chelate uptake ABC transporter family permease subunit -
  RSJ16_RS04215 (RSJ16_04210) - 801484..802239 (+) 756 WP_021128881.1 ABC transporter ATP-binding protein -
  RSJ16_RS04220 (RSJ16_04215) - 802295..803254 (+) 960 WP_101508254.1 siderophore ABC transporter substrate-binding protein -
  RSJ16_RS04225 (RSJ16_04220) - 803382..805082 (+) 1701 WP_101508255.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34884.00 Da        Isoelectric Point: 9.9859

>NTDB_id=168812 RSJ16_RS04205 WP_055329584.1 799549..800502(+) (ceuB) [Paraclostridium sordellii strain AM370]
MKKRYLLILLIALSFISLFVGVNDIKLIDLINYNQEKIDVFLISRVPRLISILVAGIGMSICGLIMQQISRNKFVSPTTG
STIDSAQLGLVFAMLVLPNSGILGKTIISFVFALAGTFTFMNILKKLKFKNAVFVPLVGIMFGNIIGSATTFIGYKYNLM
QDITSWMQGNFSMVLKGNYEMMYITIPLIVIAYLYANKFTIAGMGEDFATNLGLDYKKVLNTGLIIVSIVTASVVITIGS
IPFIGLIVPNIVSIYKGDNLKDTIWHTGLFGAIFVLICDIFSRLVIYPYEIPIGLTVGVLGSGIFLSMILRRKSYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=168812 RSJ16_RS04205 WP_055329584.1 799549..800502(+) (ceuB) [Paraclostridium sordellii strain AM370]
ATGAAGAAAAGGTACTTATTAATTTTGTTAATAGCTCTATCATTTATATCTTTATTTGTAGGTGTAAACGACATAAAGCT
GATAGATTTAATAAATTATAACCAAGAAAAAATTGATGTGTTTTTAATAAGTAGGGTACCTAGGTTAATAAGTATACTGG
TTGCAGGAATTGGAATGAGTATATGTGGGCTTATAATGCAGCAAATAAGTAGAAATAAGTTTGTATCTCCTACTACTGGA
TCTACAATAGATTCTGCTCAACTTGGATTGGTATTTGCTATGTTAGTTTTACCAAACTCAGGGATATTAGGCAAAACTAT
TATTTCATTTGTTTTTGCATTAGCAGGAACTTTTACATTTATGAATATATTAAAAAAACTAAAATTTAAAAATGCAGTAT
TTGTACCTTTAGTTGGAATTATGTTTGGAAATATAATAGGTTCAGCTACAACTTTTATAGGATATAAATATAATCTTATG
CAAGATATAACATCTTGGATGCAAGGGAATTTTTCCATGGTACTTAAAGGAAATTATGAGATGATGTATATAACTATTCC
TCTTATAGTAATTGCATATCTTTATGCTAATAAATTTACTATAGCTGGTATGGGAGAGGATTTTGCAACAAATTTAGGAC
TTGATTATAAAAAAGTTTTAAATACAGGACTAATTATAGTATCTATAGTTACAGCAAGTGTTGTTATAACTATAGGGAGC
ATACCATTTATAGGACTTATAGTTCCAAATATAGTTTCTATTTATAAAGGAGATAACTTAAAAGATACTATATGGCATAC
AGGATTATTTGGGGCTATATTTGTTTTAATTTGCGATATATTTTCAAGGTTAGTTATATACCCATATGAGATACCAATAG
GGCTTACTGTAGGGGTTTTAGGAAGCGGAATTTTCCTTAGTATGATATTAAGGAGGAAGTCATATGCAAGCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.201

98.738

0.486

Multiple sequence alignment