Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilA1 | Type | Machinery gene |
| Locus tag | AV541_RS04650 | Genome accession | NZ_CP014141 |
| Coordinates | 832170..832640 (-) | Length | 156 a.a. |
| NCBI ID | WP_060384347.1 | Uniprot ID | A0A0X8D7E7 |
| Organism | Thermus parvatiensis strain RL | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 827170..837640
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AV541_RS04625 (AV541_04630) | - | 828433..828807 (-) | 375 | WP_008631307.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| AV541_RS04630 (AV541_04635) | - | 829079..830569 (-) | 1491 | WP_008631305.1 | pilus assembly PilX family protein | - |
| AV541_RS04635 (AV541_04640) | - | 830583..831293 (-) | 711 | WP_008631303.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| AV541_RS04640 (AV541_04645) | - | 831290..831628 (-) | 339 | WP_238529967.1 | prepilin | - |
| AV541_RS04645 (AV541_04650) | - | 831648..832085 (-) | 438 | WP_244880604.1 | GspH/FimT family protein | - |
| AV541_RS04650 (AV541_04655) | pilA/pilA1 | 832170..832640 (-) | 471 | WP_060384347.1 | GspH/FimT family protein | Machinery gene |
| AV541_RS04655 (AV541_04660) | - | 832798..833778 (+) | 981 | WP_060384348.1 | YpdA family putative bacillithiol disulfide reductase | - |
| AV541_RS04660 (AV541_04665) | ilvB | 833934..835622 (+) | 1689 | WP_060384349.1 | biosynthetic-type acetolactate synthase large subunit | - |
| AV541_RS04665 (AV541_04670) | ilvN | 835619..836131 (+) | 513 | WP_011173280.1 | acetolactate synthase small subunit | - |
| AV541_RS04670 (AV541_04675) | ilvC | 836128..837141 (+) | 1014 | WP_060384350.1 | ketol-acid reductoisomerase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 16904.69 Da Isoelectric Point: 11.5069
>NTDB_id=168676 AV541_RS04650 WP_060384347.1 832170..832640(-) (pilA/pilA1) [Thermus parvatiensis strain RL]
MTRRGLTLLELLLVLGILGVLLGLALPLLSPNRLALDQAARSLAAQVTRARLEAIRRNTFVGLQVFTEGAGGYLLFVDQN
ANRRYDPGEEFGATRFGQGDWARVRLDPEKSALGNMPLLFDPRGIPAKPITATLVLTSGGATRKVVISQQGRARLE
MTRRGLTLLELLLVLGILGVLLGLALPLLSPNRLALDQAARSLAAQVTRARLEAIRRNTFVGLQVFTEGAGGYLLFVDQN
ANRRYDPGEEFGATRFGQGDWARVRLDPEKSALGNMPLLFDPRGIPAKPITATLVLTSGGATRKVVISQQGRARLE
Nucleotide
Download Length: 471 bp
>NTDB_id=168676 AV541_RS04650 WP_060384347.1 832170..832640(-) (pilA/pilA1) [Thermus parvatiensis strain RL]
ATGACGCGGCGGGGCCTTACCCTTTTGGAGCTCCTGCTGGTCTTGGGCATCCTGGGGGTCCTCCTAGGGCTGGCCCTTCC
ACTTCTTTCCCCCAACCGCCTCGCCCTGGACCAGGCCGCCCGCTCCCTCGCCGCCCAGGTGACCCGGGCACGGCTGGAGG
CCATCCGCCGGAACACCTTCGTGGGCCTTCAGGTGTTCACCGAAGGAGCGGGGGGTTACCTGCTCTTCGTGGACCAAAAC
GCCAACCGCCGCTACGACCCCGGGGAGGAGTTCGGCGCGACCCGCTTCGGCCAAGGGGACTGGGCCCGGGTGCGCCTGGA
CCCGGAGAAGAGCGCCCTCGGCAACATGCCTCTTCTCTTTGACCCCCGGGGCATCCCGGCCAAGCCCATCACCGCCACGC
TCGTCCTCACCTCAGGGGGCGCCACCCGCAAGGTGGTCATCTCCCAGCAGGGCCGGGCCCGCCTGGAGTGA
ATGACGCGGCGGGGCCTTACCCTTTTGGAGCTCCTGCTGGTCTTGGGCATCCTGGGGGTCCTCCTAGGGCTGGCCCTTCC
ACTTCTTTCCCCCAACCGCCTCGCCCTGGACCAGGCCGCCCGCTCCCTCGCCGCCCAGGTGACCCGGGCACGGCTGGAGG
CCATCCGCCGGAACACCTTCGTGGGCCTTCAGGTGTTCACCGAAGGAGCGGGGGGTTACCTGCTCTTCGTGGACCAAAAC
GCCAACCGCCGCTACGACCCCGGGGAGGAGTTCGGCGCGACCCGCTTCGGCCAAGGGGACTGGGCCCGGGTGCGCCTGGA
CCCGGAGAAGAGCGCCCTCGGCAACATGCCTCTTCTCTTTGACCCCCGGGGCATCCCGGCCAAGCCCATCACCGCCACGC
TCGTCCTCACCTCAGGGGGCGCCACCCGCAAGGTGGTCATCTCCCAGCAGGGCCGGGCCCGCCTGGAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilA1 | Thermus thermophilus HB27 |
97.436 |
100 |
0.974 |