Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AL468_RS23860 Genome accession   NZ_CP014134
Coordinates   3033877..3035283 (+) Length   468 a.a.
NCBI ID   WP_168187849.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_99     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3028877..3040283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL468_RS23835 (AL468_15250) rsxB 3029409..3030005 (-) 597 WP_005396655.1 electron transport complex subunit RsxB -
  AL468_RS23840 (AL468_15255) rsxA 3030009..3030587 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  AL468_RS23855 (AL468_15270) uvrB 3031551..3033581 (+) 2031 WP_065646646.1 excinuclease ABC subunit UvrB -
  AL468_RS23860 (AL468_15275) luxO 3033877..3035283 (+) 1407 WP_168187849.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AL468_RS23865 (AL468_15280) luxU 3035280..3035624 (+) 345 WP_012841577.1 quorum-sensing phosphorelay protein LuxU -
  AL468_RS23870 (AL468_15285) - 3035737..3036633 (-) 897 WP_006742807.1 YvcK family protein -
  AL468_RS23875 (AL468_15290) moaA 3036932..3037921 (+) 990 WP_006742808.1 GTP 3',8-cyclase MoaA -
  AL468_RS23880 (AL468_15295) moaB 3038027..3038539 (+) 513 WP_005396648.1 molybdenum cofactor biosynthesis protein B -
  AL468_RS23885 (AL468_15300) moaC 3038566..3039045 (+) 480 WP_005396647.1 cyclic pyranopterin monophosphate synthase MoaC -
  AL468_RS23890 (AL468_15305) moaD 3039042..3039299 (+) 258 WP_005396646.1 molybdopterin synthase sulfur carrier subunit -
  AL468_RS23895 (AL468_15310) moaE 3039301..3039756 (+) 456 WP_104971969.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52146.73 Da        Isoelectric Point: 6.2543

>NTDB_id=168594 AL468_RS23860 WP_168187849.1 3033877..3035283(+) (luxO) [Vibrio diabolicus strain FDAARGOS_99]
MQQKSEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELVDG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAPDVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKFIEPKVMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=168594 AL468_RS23860 WP_168187849.1 3033877..3035283(+) (luxO) [Vibrio diabolicus strain FDAARGOS_99]
ATGCAACAAAAATCTGAAGGTCCTAAATCTCGTTACCTTTTAATGGTTGAGGATACCGCATCCGTTGCGGCACTGTACCG
CTCATACCTGACACCGCTTGGTATAGATATCAATATTGTCGGTACAGGTAGGGATGCCATTGAAAGTCTCAACCATAGAA
TTCCAGATCTTATTCTGCTCGATCTTCGTCTGCCAGATATGACGGGGATGGACGTTTTACACGCTGTAAAAAAGAGTCAT
CCAGACGTACCTATTATTTTTATGACCGCTCACGGTTCTATCGATACCGCGGTAGAAGCAATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCGATTCGTAAAGCGACTAAGTTAAAAA
ACGAGGCTGATAACCCGGGAAATCAAAGTTATCAAGGCTTTATTGGCAGTAGTCAAACAATGCAACAGGTTTACCGCACG
ATTGATTCAGCAGCGAGCAGTAAAGCGAGTATCTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCCGAGGC
AATTCATGCGGCAAGCAAGCGTGGTGACAAGCCTTTTATTGCGATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAGCTGTTTGGTCACGTGAAAGGTGCTTTTACTGGCGCAGCAAATGATCGTCAGGGTGCAGCGGAATTAGTGGATGGT
GGCACACTTTTCCTTGATGAACTGTGTGAGATGGACTTAGATTTGCAAACCAAATTGCTGCGATTTATTCAAACTGGCAC
GTTCCAAAAAGTGGGCTCATCAAAAATGAAGAGCGTGGATGTTCGCTTTGTTTGTGCAACTAACCGTGACCCATGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTGCCGCCTTTACGTGAA
CGAGGTGAAGATGTCATTGAAATTGCATACTCACTGTTAGGCTATATGTCGCACGAAGAAGGAAAAAGCTTCGTACGTTT
TGCGCCTGATGTAATCGACCGATTTAATAGCTATGAGTGGCCTGGCAACGTTCGTCAGTTACAAAACGTGCTGCGCAATA
TCGTTGTTCTTAACAACGGTAAAGAAATCACGTTGGATATGTTACCGCCACCGCTGAATCAACCGCTTGACCGTCCGTCT
TCTGTGGCGAAATTCATTGAGCCGAAAGTGATGACTGCGTCTGAGATTATGCCGTTGTGGATGACAGAAAAAATGGCGAT
AGAGCAAGCGATTGAAGCGTGTGATGGCAATATCCCCCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCTTGGAATGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.86

95.94

0.833

Multiple sequence alignment