Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AL468_RS21430 Genome accession   NZ_CP014134
Coordinates   2529792..2530310 (+) Length   172 a.a.
NCBI ID   WP_005396698.1    Uniprot ID   A0AAE4S8W0
Organism   Vibrio diabolicus strain FDAARGOS_99     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2524792..2535310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL468_RS21420 (AL468_12835) gshA 2527509..2529077 (+) 1569 WP_046875082.1 glutamate--cysteine ligase -
  AL468_RS21425 (AL468_12840) - 2529102..2529707 (+) 606 WP_176320214.1 hypothetical protein -
  AL468_RS21430 (AL468_12845) luxS 2529792..2530310 (+) 519 WP_005396698.1 S-ribosylhomocysteine lyase Regulator
  AL468_RS21435 (AL468_12850) - 2530434..2531702 (-) 1269 WP_005396696.1 CNNM domain-containing protein -
  AL468_RS21440 (AL468_12855) - 2531827..2532621 (-) 795 WP_047008980.1 inner membrane protein YpjD -
  AL468_RS21445 (AL468_12860) ffh 2532846..2534228 (+) 1383 WP_005385423.1 signal recognition particle protein -
  AL468_RS21450 (AL468_12865) rpsP 2534438..2534686 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  AL468_RS21455 (AL468_12870) rimM 2534716..2535264 (+) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19078.77 Da        Isoelectric Point: 4.6153

>NTDB_id=168587 AL468_RS21430 WP_005396698.1 2529792..2530310(+) (luxS) [Vibrio diabolicus strain FDAARGOS_99]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNSDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKSILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=168587 AL468_RS21430 WP_005396698.1 2529792..2530310(+) (luxS) [Vibrio diabolicus strain FDAARGOS_99]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGCATGAATGCACCGGCAGTGCGAGTGGCGAAGACCATGCAGAC
CCCAAAAGGGGACACGATTACTGTCTTCGATTTACGCTTTACCGCGCCAAACAAAGACATCCTTTCTGAAAAAGGTATTC
ATACACTAGAGCACCTTTATGCAGGCTTTATGCGCAATCACCTAAACAGCGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACGGGCTTTTACATGAGCCTGATTGGCACTCCATCAGAGCAGCAAGTAGCGGATGCTTGGATTGCGGC
CATGGAAGACGTACTAAAGGTAGAAAGCCAGAACAAGATCCCTGAACTCAACGAATACCAATGTGGCACGGCAGCGATGC
ACTCTTTAGAAGAAGCACAACAGATCGCAAAGAGCATTTTGGATGCTGGTGTATCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAATCGATGCTAAAAGAGCTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment