Detailed information NTG0168584

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AL468_RS21295
• Genome accession: NZ_CP014134
• Coordinates: 2507153..2508139 (+)
• Length: 328 a.a.
• NCBI ID: WP_104974805.1
• Uniprot ID: -
• Organism: Vibrio diabolicus strain FDAARGOS_99
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2502153..2513139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL468_RS21260 (AL468_12675)	ftsB	2502162..2502443 (+)	282	WP_005380907.1	cell division protein FtsB	-
AL468_RS21265 (AL468_12680)	ispD	2502445..2503149 (+)	705	WP_104974803.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AL468_RS21270 (AL468_12685)	ispF	2503167..2503643 (+)	477	WP_005393886.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AL468_RS21275 (AL468_12690)	truD	2503690..2504733 (+)	1044	WP_104974804.1	tRNA pseudouridine(13) synthase TruD	-
AL468_RS21280 (AL468_12695)	surE	2504733..2505509 (+)	777	WP_046875092.1	5'/3'-nucleotidase SurE	-
AL468_RS21285 (AL468_12700)	-	2505509..2506135 (+)	627	WP_046875091.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AL468_RS21290 (AL468_12705)	-	2506149..2507072 (+)	924	WP_006743295.1	peptidoglycan DD-metalloendopeptidase family protein	-
AL468_RS21295 (AL468_12710)	rpoS	2507153..2508139 (+)	987	WP_104974805.1	RNA polymerase sigma factor RpoS	Regulator
AL468_RS21300 (AL468_12715)	mutS	2508222..2510783 (-)	2562	WP_104974806.1	DNA mismatch repair protein MutS	-
AL468_RS21305 (AL468_12720)	pncC	2510868..2511350 (+)	483	WP_104974807.1	nicotinamide-nucleotide amidase	-
AL468_RS21310 (AL468_12725)	recA	2511551..2512594 (+)	1044	WP_005393872.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.35 Da
• Isoelectric Point: 4.7299

>NTDB_id=168584 AL468_RS21295 WP_104974805.1 2507153..2508139(+) (rpoS) [Vibrio diabolicus strain FDAARGOS_99]
MSISNTVTKVEEFAFDNASVKTIDNELEKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERVLMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=168584 AL468_RS21295 WP_104974805.1 2507153..2508139(+) (rpoS) [Vibrio diabolicus strain FDAARGOS_99]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAAATCATCATCCACAGAAAGCAAAACGGCTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGACGCAACTC
AGTTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCCGAAGAAGAAGTGCTTTATGCTCGACGAGCCCTGCGT
GGCGACGAAGCGGCACGTAAACGTATGATCGAAAGTAACCTACGTTTGGTGGTCAAGATCTCTCGTCGATATAGTAATCG
CGGCCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTTGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAGCGTG
GTTTCCGCTTCTCTACTTATGCGACCTGGTGGATCCGACAAACGATCGAACGTGTGTTGATGAACCAAACTCGTACGATC
CGTCTACCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCACGA
ACCTACCGCAGAAGAAATTGCTGCTCAGTTAGATATTCCAGTCGAAGATGTAAGCAAAATGCTACGTCTCAATGAGCGTA
TCAGTTCTGTCGACACACCAATCGGTGGTGACGGTGAAAAAGCGCTGTTGGATATTATTCCCGACGCAAACAACTCCGAT
CCAGAAGTCTCGACTCAAGATGACGATATCAAATCATCGCTGATTCATTGGTTAGAAGAGTTGAATCCAAAACAGAAAGA
AGTACTTGCACGACGTTTTGGTCTTCTAGGCTATGAGCCTTCGACGCTTGAAGAAGTTGGTCGAGAGATTGGTTTGACAC
GTGAGCGTGTACGTCAAATCCAAGTAGAAGGTTTACGTCGTCTTCGTGAGGTTTTAATCAAGCAAGGTTTGAATATGGAA
AACTTATTTAACGTCGAAGATGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-156)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.234	100	0.848