Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AL468_RS17020 Genome accession   NZ_CP014134
Coordinates   1656710..1657738 (+) Length   342 a.a.
NCBI ID   WP_254901949.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_99     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1651710..1662738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL468_RS16995 (AL468_08410) rplC 1652277..1652906 (-) 630 WP_005379555.1 50S ribosomal protein L3 -
  AL468_RS17000 (AL468_08415) rpsJ 1652921..1653232 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  AL468_RS17005 (AL468_08420) rpmE 1653688..1653909 (-) 222 WP_005379546.1 50S ribosomal protein L31 -
  AL468_RS17015 (AL468_08430) priA 1654205..1656406 (+) 2202 WP_104974554.1 primosomal protein N' -
  AL468_RS17020 (AL468_08435) cytR 1656710..1657738 (+) 1029 WP_254901949.1 DNA-binding transcriptional regulator CytR Regulator
  AL468_RS17025 (AL468_08440) ftsN 1657963..1658511 (+) 549 WP_017820300.1 cell division protein FtsN -
  AL468_RS17030 (AL468_08445) hslV 1658627..1659178 (+) 552 WP_005379541.1 ATP-dependent protease subunit HslV -
  AL468_RS17035 (AL468_08450) hslU 1659202..1660533 (+) 1332 WP_006742475.1 HslU--HslV peptidase ATPase subunit -
  AL468_RS17040 (AL468_08455) - 1661507..1662424 (+) 918 WP_047009017.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37765.46 Da        Isoelectric Point: 6.4948

>NTDB_id=168565 AL468_RS17020 WP_254901949.1 1656710..1657738(+) (cytR) [Vibrio diabolicus strain FDAARGOS_99]
MNERLKTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPY
FSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELEL
PTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLE
LPEPPTAIFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVH
SGSRLLETNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=168565 AL468_RS17020 WP_254901949.1 1656710..1657738(+) (cytR) [Vibrio diabolicus strain FDAARGOS_99]
ATAAACGAGAGGTTAAAAACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCG
AGCATTAATGAACCCAGAGAAGGTCTCTTCTTCAACGAGAAAAAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTC
CAAACTCATTAGCGCGTAACTTACGTAGAAACGAATCAAAAACCATTGTCACTATCGTTCCCGACATCTGTGATCCTTAT
TTTTCTGAAATTATTCGCGGCATTGAAGATGCTGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACA
GAAGAAACGCGAAAGTTCTTTCGTTAACCTCGTATTTACTAAGCAGGCGGATGGAATGCTACTGCTTGGCACAGATCTAC
CGTTCGATGTCAGTAAGCCAGAACAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGTTAGAACTT
CCGACAGTACATATTGACAACCTGACCTCAGCATTTGAAGCGGTGAATTACCTAACCCAACTAGGTCATAAACGCATCGC
GCAAATCTCGGGGCCAGATACGGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCA
TCAATAAAGATCCACAATATAGTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGCAAACTGCTCGAA
TTGCCTGAGCCACCAACGGCTATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGG
CTTACGAGTACCGCAAGATCTCTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCA
CCATCTCTCAGCCTCGCTATGAGATTGGTCGACAAGCAATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCAT
TCAGGCTCGCGCCTACTTGAAACTAACCTCGTCATTCGCGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-335)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.935

99.123

0.971
  cytR Vibrio cholerae C6706

89.521

97.661

0.874

Multiple sequence alignment