Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AL468_RS11850 Genome accession   NZ_CP014134
Coordinates   567902..569323 (+) Length   473 a.a.
NCBI ID   WP_005397785.1    Uniprot ID   A0AAE4M4S2
Organism   Vibrio diabolicus strain FDAARGOS_99     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 562902..574323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL468_RS11830 (AL468_03245) - 563385..564191 (-) 807 WP_046874846.1 adenosylcobinamide-GDP ribazoletransferase -
  AL468_RS11835 (AL468_03250) cobT 564191..565234 (-) 1044 WP_104974214.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AL468_RS11840 (AL468_03255) - 565482..566171 (+) 690 WP_104974215.1 NAD(P)H-binding protein -
  AL468_RS11845 (AL468_03260) - 566372..567745 (+) 1374 WP_054867346.1 L-cystine transporter -
  AL468_RS11850 (AL468_03265) sbcB 567902..569323 (+) 1422 WP_005397785.1 exodeoxyribonuclease I Machinery gene
  AL468_RS11855 (AL468_03270) - 569379..569753 (+) 375 WP_005397786.1 CidA/LrgA family protein -
  AL468_RS11860 (AL468_03275) - 569755..570432 (+) 678 WP_104974216.1 LrgB family protein -
  AL468_RS11865 (AL468_03280) cdd 570875..571762 (+) 888 WP_085343176.1 cytidine deaminase -
  AL468_RS11870 (AL468_03285) purT 571908..573083 (+) 1176 WP_104974217.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  AL468_RS11875 (AL468_03290) - 573155..573805 (-) 651 WP_046874957.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54416.63 Da        Isoelectric Point: 4.8658

>NTDB_id=168555 AL468_RS11850 WP_005397785.1 567902..569323(+) (sbcB) [Vibrio diabolicus strain FDAARGOS_99]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=168555 AL468_RS11850 WP_005397785.1 567902..569323(+) (sbcB) [Vibrio diabolicus strain FDAARGOS_99]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACAAACCCCGCGAAAGATCGCCCAAG
CCAGTTCGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGCCAGCCACCTGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCT
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGCTGGG
ATTTACTCGATGTGCTACGCGCATGCCACGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGTTTTAAATTAGAGCACTTGTCTGTTGCTAACGGCATAGAACATAGTAACGCGCACGATGCGATGGCAGACGTGATTGC
GACTATCGAAATGGCGAAAAAAGTCAAAGCAGCGCAACCAAAATTGTTTGACTACTTCTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGAATTAGTCGACATCGTCAACATGACGCCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAACAACGCTGTTATCACTATCGATTTAGCGAAAGACCCTCA
ACCTATTCTAGAGCTATCCGCAGAAGAGCTACACGAAAGACTCTACACTAAGCGAGAAGATCTTGGTGAATTGCTACCAG
TGCCTGTTAAGTTGGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCCAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACGCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGCGAAACCGACCCGAATAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAGAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment