Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AL468_RS11050 Genome accession   NZ_CP014134
Coordinates   383759..385282 (+) Length   507 a.a.
NCBI ID   WP_104974123.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_99     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 378759..390282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL468_RS11025 (AL468_02440) - 379091..379411 (+) 321 WP_005394270.1 STAS domain-containing protein -
  AL468_RS11030 (AL468_02445) - 379438..380304 (+) 867 WP_046875254.1 OmpA family protein -
  AL468_RS11035 (AL468_02450) - 380301..382403 (+) 2103 WP_104974121.1 SLBB domain-containing protein -
  AL468_RS11040 (AL468_02455) - 382403..383089 (+) 687 WP_104974122.1 AAA family ATPase -
  AL468_RS11045 (AL468_02460) - 383101..383481 (+) 381 WP_168187806.1 Hpt domain-containing protein -
  AL468_RS11050 (AL468_02465) luxO 383759..385282 (+) 1524 WP_104974123.1 sigma-54 dependent transcriptional regulator Regulator
  AL468_RS11055 (AL468_02470) - 385257..386327 (+) 1071 WP_104974124.1 glycosyltransferase family 4 protein -
  AL468_RS11060 (AL468_02475) - 386483..387667 (+) 1185 WP_104974125.1 glycosyltransferase -
  AL468_RS11065 (AL468_02480) - 387679..388851 (+) 1173 WP_104975076.1 glycosyltransferase family 4 protein -
  AL468_RS11070 (AL468_02485) - 388844..390274 (+) 1431 WP_168187807.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 56860.81 Da        Isoelectric Point: 6.1651

>NTDB_id=168554 AL468_RS11050 WP_104974123.1 383759..385282(+) (luxO) [Vibrio diabolicus strain FDAARGOS_99]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTLNHLPAQLTRKSKTVRTSTPA
HVTQEPAPPPTITSRPVYVEEQSAPAREPSIPTPEPNIQSSAVASPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNAA
VMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=168554 AL468_RS11050 WP_104974123.1 383759..385282(+) (luxO) [Vibrio diabolicus strain FDAARGOS_99]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTCAAAGACGAACCTTA
TGACATTTTTCATGTCGAAACAGGTCGCGAAGCAATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGATATGTCTGGTGAAGACGTGTTGGATTGGATCAACCAGAATGACATTCCTACCTCCGTTATTATTGCT
ACAGCGCACGGCAGCGTAGACTTAGCCGTTAACCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAACCTATTAACGC
CGATCGCCTAAAAACTTCTGTTGCATTACACCTCAAACGCGCCAAATTGGAAGATTTAGTAGAAAATATTCAGTCCAAGT
TTGATCGCCATAACTATCACGGATTTATCGGTTCAAGTCTCCCAATGCAGGCGGTATATAAAACTATTGATGCCGTTGCT
CCAACATCTGCCAGTGTCTTTATTGTGGGTGAAAGCGGCACAGGTAAAGAAGTCTGTGCTGAAGCCGTGCACCGTCAGAG
CGACCGTAAAGACAAACCTTTTATTGCTATAAACTGCGGGGCTATCCCACGAGATTTAATGGAAAGTGAGATTTTTGGCC
ATGTTAAAGGCGCATTTACCGGAGCCACAACAGACCGAAAAGGTGCTGCGACGCTGGCTCACGGTGGTACGCTTTTTCTC
GATGAACTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTTCAAACAGGAACCTACACACCGCTTGG
TGGCACTCGAGAGATGAAGGTGGATGTTCGAATCATTTGTGCCACCAACCGAGATCCATTAACAGAAGTGGAAGAAGGTC
GTTTTCGTGAAGATTTGTATTACCGCGTACACGTAATACCTATCGATATGCCCCCCCTACGCGAGCGAGGAAGTGACATT
GTCACGCTAGCCAAGCACTTTTTGACCACTTATGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCACTACGAATGGCCGGGTAATGTAAGGCAATTGCAAAACATCATACGTAACATTGTAGTGCTTAATA
ATGACGAAAAAGTCACGCTGAATCACCTACCCGCTCAACTGACTAGAAAGTCTAAAACGGTGAGAACATCCACTCCCGCA
CATGTAACTCAAGAGCCAGCACCCCCTCCAACAATAACATCCCGACCAGTGTATGTTGAGGAACAATCGGCCCCCGCTAG
AGAACCGTCAATACCGACACCGGAACCTAACATACAATCATCAGCGGTTGCCTCGCCGTACTTTAACTCTGATGGAACCA
TTCGCCCTATGTGGCAAGTGGAACGCGAGGCCATTCAAAACGCAATCGCATACTGTGATGGCAACGTTCTCAATGCCGCC
GTAATGCTGGAGCTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACAATC
TTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(457-493)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.593

97.041

0.481

Multiple sequence alignment