Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   AL468_RS04670 Genome accession   NZ_CP014133
Coordinates   981322..982419 (+) Length   365 a.a.
NCBI ID   WP_104973499.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_99     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 976322..987419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL468_RS04640 (AL468_20885) - 977650..978987 (-) 1338 WP_104973497.1 MATE family efflux transporter -
  AL468_RS04645 (AL468_20890) - 979109..979423 (-) 315 WP_005373603.1 DUF496 family protein -
  AL468_RS04650 (AL468_20895) - 979665..979868 (+) 204 WP_031780656.1 hypothetical protein -
  AL468_RS04655 (AL468_20900) - 980034..980684 (+) 651 WP_104973498.1 YceH family protein -
  AL468_RS04660 (AL468_20905) - 980681..981001 (+) 321 WP_012842363.1 GIY-YIG nuclease family protein -
  AL468_RS04670 (AL468_20915) luxP 981322..982419 (+) 1098 WP_104973499.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  AL468_RS04675 (AL468_20920) luxQ 982419..984995 (+) 2577 WP_005397731.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  AL468_RS04680 (AL468_20925) - 985298..985753 (+) 456 WP_005397727.1 MarR family transcriptional regulator -
  AL468_RS04685 (AL468_20930) - 985789..986847 (+) 1059 WP_104973500.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41624.93 Da        Isoelectric Point: 5.0738

>NTDB_id=168550 AL468_RS04670 WP_104973499.1 981322..982419(+) (luxP) [Vibrio diabolicus strain FDAARGOS_99]
MKKALVFSLMSMATVAPIAQATQVLNGYWAYQEFLDQFPEQKQLTNALADAVRETPVPVERDKKRPLKISVVYPGQQISD
YWIRNIDAFEQRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEDHQPFLYVGFDHAEGSRELAVEFGKRFPKQSHYSVLYFSEGYISDIRGNTFINQVNRDNNFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKHVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=168550 AL468_RS04670 WP_104973499.1 981322..982419(+) (luxP) [Vibrio diabolicus strain FDAARGOS_99]
ATGAAAAAAGCGTTAGTATTCTCCCTGATGTCAATGGCCACTGTCGCGCCGATAGCGCAAGCCACTCAAGTCCTCAATGG
GTATTGGGCGTATCAAGAATTTTTAGACCAGTTTCCAGAACAGAAGCAGTTAACGAATGCGTTGGCTGACGCCGTGCGAG
AGACTCCTGTTCCGGTTGAAAGAGACAAAAAGCGTCCGTTAAAAATTTCTGTGGTTTATCCAGGCCAACAGATTTCGGAT
TATTGGATTCGAAATATCGACGCATTTGAACAGCGTTTAGATAAACTCGATATCGACTATCAACTTAATCAAGTTTTTAC
CCGTCCCAACGCAGATATTAAGCAACAAAGTTTGTCTTTAATGGAAGCGCTGAAGAGCAACTCCGATTATCTGATTTTCA
CTCTCGATACCACTAGGCATCGTAAGTTTGTTGAGCACGTCTTAGACTCAAAGAAAACCAAGTTGATCTTACAAAATATC
ACTACACCGGTAAGAGATTGGGAGGATCACCAACCGTTCCTTTATGTTGGTTTTGATCATGCTGAAGGCAGCCGTGAGCT
TGCAGTGGAGTTTGGTAAGCGTTTTCCAAAACAGAGCCATTATAGTGTGCTCTACTTTTCAGAAGGGTATATCAGCGATA
TCAGAGGCAACACCTTTATCAATCAAGTCAACCGTGATAACAACTTTGAACTACAATCTGCTTATTATACCAAAGCGACA
AAGCAGTCTGGGTATGAAGCAGCAAAAGCGAGTTTGGAAAAATACCCTGACGTCGATTTTATTTATGCGTGTTCTACAGA
TGTTGCGCTAGGTGCTGTTGATGCGCTGAAAGAGTTAGGGCGTGATGATGTCATGATCAACGGCTGGGGTGGCGGCTCTG
CAGAATTAGAAGCGCTTTCGAAAGGGGAGTTAGACGTTACTGTTATGCGTATGAACGATGATACTGGCATTGCAATGGCA
GAAGCGATTAAGTGGGATCTTGAAGGGAAACACGTTCCAACCGTTTATTCTGGTGATTTTGAAGTCGTCACGAAATCTGA
TTCTCCAGAAAGAATTGAAGCATTAAGAAAACGCGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment