Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AL516_RS17440 Genome accession   NZ_CP014123
Coordinates   3248328..3248924 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain FDAARGOS_156     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3243328..3253924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL516_RS17425 (AL516_17430) helD 3243536..3245590 (-) 2055 WP_009308304.1 DNA helicase IV -
  AL516_RS17430 (AL516_17435) - 3245715..3246161 (+) 447 WP_002898425.1 YccF domain-containing protein -
  AL516_RS17435 (AL516_17440) yccS 3246179..3248314 (+) 2136 WP_002898422.1 YccS family putative transporter -
  AL516_RS17440 (AL516_17445) sxy/tfoX 3248328..3248924 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  AL516_RS17450 (AL516_17455) sulA 3249273..3249782 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  AL516_RS17455 (AL516_17460) ompA 3250135..3251205 (+) 1071 WP_002898408.1 porin OmpA -
  AL516_RS17460 (AL516_17465) matP 3251338..3251790 (-) 453 WP_085205447.1 macrodomain Ter protein MatP -
  AL516_RS17465 (AL516_17470) - 3251976..3253733 (+) 1758 WP_040223589.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=168482 AL516_RS17440 WP_004179217.1 3248328..3248924(-) (sxy/tfoX) [Klebsiella pneumoniae strain FDAARGOS_156]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=168482 AL516_RS17440 WP_004179217.1 3248328..3248924(-) (sxy/tfoX) [Klebsiella pneumoniae strain FDAARGOS_156]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment