Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A4C50_RS22555 Genome accession   NZ_CP017434
Coordinates   4358611..4359087 (+) Length   158 a.a.
NCBI ID   WP_001186786.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain 1130     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4353611..4364087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4C50_RS22525 (A4C50_22525) - 4354519..4355226 (+) 708 WP_000189397.1 WYL domain-containing protein -
  A4C50_RS31745 - 4355228..4355377 (+) 150 WP_001458941.1 hypothetical protein -
  A4C50_RS22530 (A4C50_22530) - 4355389..4355604 (+) 216 WP_000508241.1 hypothetical protein -
  A4C50_RS22535 (A4C50_22535) - 4355696..4356106 (+) 411 WP_000642925.1 hypothetical protein -
  A4C50_RS22540 (A4C50_22540) - 4356280..4357110 (+) 831 WP_231437292.1 hypothetical protein -
  A4C50_RS22545 (A4C50_22545) - 4357200..4358018 (+) 819 WP_001234373.1 DUF932 domain-containing protein -
  A4C50_RS22550 (A4C50_22550) - 4358110..4358595 (+) 486 WP_000214420.1 antirestriction protein -
  A4C50_RS22555 (A4C50_22555) radC 4358611..4359087 (+) 477 WP_001186786.1 JAB domain-containing protein Machinery gene
  A4C50_RS22560 (A4C50_22560) - 4359156..4359377 (+) 222 WP_000692308.1 DUF987 domain-containing protein -
  A4C50_RS22565 (A4C50_22565) - 4359457..4359751 (+) 295 Protein_4326 type IV toxin-antitoxin system YeeU family antitoxin -
  A4C50_RS30155 - 4359954..4360275 (+) 322 Protein_4327 TA system toxin CbtA family protein -
  A4C50_RS22570 (A4C50_22570) - 4360661..4361731 (+) 1071 WP_000942525.1 DNA cytosine methyltransferase -
  A4C50_RS30160 - 4361710..4362369 (-) 660 WP_001444700.1 HNH endonuclease -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17776.44 Da        Isoelectric Point: 7.6152

>NTDB_id=168469 A4C50_RS22555 WP_001186786.1 4358611..4359087(+) (radC) [Escherichia coli O157:H7 strain 1130]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=168469 A4C50_RS22555 WP_001186786.1 4358611..4359087(+) (radC) [Escherichia coli O157:H7 strain 1130]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392